BROOD v2.0ΒΆ
- Graphical Interface
- Overview
- Query Editing
- Build a Query Task
- Load a Molecule
- Load a Protein
- Property Examination
- Fragment Selection
- Color Force-Field
- Attachment Points
- Query Editing Tools
- Color-Atom Tool
- Color-Constraint Tool
- Adding Constraints
- Custom-Constraints
- Substructure Editor
- Substructure Browser
- Custom Substructure Selection
- Custom-Constraint Table
- Protein Visibility
- Running a BROOD Search
- Run Brood Task
- Loading Queries From Session
- Loading Recent Queries
- Loading Saved Queries
- Query Details Reporting
- Adding a Protein to a Query
- Protein Visibility
- Optional Property Filtering
- Loading Recent Filters
- Loading Saved Filters
- Filter Property Quick-View
- BROOD Search Parameters
- Advanced Parameter Access
- Output Prefix
- Quick Search
- Require Rings
- Search Type
- Output Directory
- CSV File Creation
- Run BROOD Search
- Advanced: Database
- Advanced: Database Navigation
- Advanced: Dots
- Advanced: MPI
- Advanced: Other
- Advanced: Hitlist Size
- Advanced: Update Frequency
- Advanced: Output Format
- Advanced: Other Output
- While the Search Runs
- Intermediate Results
- Opening the New Hitlist
- Results Depictions
- Results Output
- Results Status
- Property Profile Design
- Property Filter Task
- Database and Hitlist Filtering
- Reference Query
- Recent Reference Queries
- Default Filters
- Property Histograms
- Drag and Drop Filtering
- Value-based Filtering
- Reading the Histograms
- Filter Interdependence
- Boolean Filters
- Saving a Database Filter
- Database Filter Dialog
- Saving a Filtered Hitlist
- Filtered Hitlist Dialog
- Viewing Saved Results
- Results Hierarchy Browser
- Results Viewer Introduction
- Results Viewer Control Panel
- Query and Cluster-Heads
- Molecular Navigation
- Left-Right Cluster Navigation
- Query-Ligand Overlay
- Query Display
- The Active Ligand (Blue Box)
- Protein Display
- Hydrogen-Bonds
- Multi-Structure View
- Number of Structures
- 2D/3D View
- Property View
- Property Detachment
- Activity Belief Model
- Calculated Properties
- Cluster Drill-Down
- Cluster View and Navigation
- Adding Favorites
- Viewing Favorties
- Removing Favorites
- Saving Favorties
- Deleting Molecules
- Recovering Deleted Molecules
- HotKeys
- Protein Surface Display
