Index

_ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X

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_

_Extract OEChem::OEQuaternion OEChem::OERotMatrix OEChem::OETranslation

A

Acquire OEPlatform::OECondition OEPlatform::OEMutex OEPlatform::OETryMutex Add OEChem::OEVectorBindings AddAlias OESystem::OEParameter AddAtom OEChem::OEConfBaseT AddBaseData OESystem::OEBase AddBond OEChem::OEAtomBase OEChem::OEConfBaseT AddConstraint OEChem::OECliqueSearch OEChem::OEMCSSearch OEChem::OESubSearch AddData OEChem::OEGraphMol OEChem::OEMol OEChem::OEQMol OESystem::OEBase AddDefault OESystem::OETypedParameter AddDetail OESystem::OEInterface OESystem::OEParameter AddGaussian OESystem::OEGaussianContainer OESystem::OEGaussianContainerBase AddIllegalRange OESystem::OEParameter AddIllegalValue OESystem::OEParameter AddInterface OESystem::OEInterface AddLegalRange OESystem::OEParameter AddLegalValue OESystem::OEParameter AddPair OEChem::OEMatch AddParameter OESystem::OEInterface

AddStartingMaterial OEChem::OELibraryGen AddStringDefault OESystem::OEParameter AddStringValue OESystem::OEParameter AddValue OESystem::OETypedParameter append OEPlatform::oeofstream aromatic ring system identification Aromaticity.java Example Code ASCIIWriter.java Example Code AsRegularGrid OESystem::OESkewGrid atom aromaticity atom chirality atom connection atom degree atom heavy degree atom heavy valence atom name atom parent atom properties atom radius atom ring membership atom stereo atom type name atom valence atomic hybridization atomic number, [1] atomic symbol AtomMap.java Example Code AtomMatch OEChem::OESubSearch AtomSubsetEvil.java Example Code AtomSubsetGood.java Example Code

B

bond aromaticity bond begin atom bond begin atom index bond chirality bond end atom bond end atom index bond index bond order bond parent bond properties

bond ring membership bond stereo, [1] bond type name Broadcast OEPlatform::OECondition BuildExpressions OEChem::OEQMol OEChem::OEQMolBase

C

canonical isomeric SMILES canonical SMILES chiral atom ClassID OESystem::OEParameter Clear OEBio::OESequenceAlignment OEChem::OEAtomBase OEChem::OEBondBase OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMatch OEChem::OEMatchBase OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol OEChem::OETrans OESystem::OEBase OESystem::OEErrorHandler OESystem::OEErrorHandlerImplBase OESystem::OEGaussianContainer OESystem::OEGaussianContainerBase OESystem::OEGrid OESystem::OEGridAbstractBase OESystem::OEGridBase OESystem::OEInterface OESystem::OEMultiGrid OESystem::OEScalarGrid OESystem::OESkewGrid clear OEPlatform::oeisstream OEPlatform::oeiwrapperstream OEPlatform::oeosstream OEPlatform::oeowrapperstream ClearAromaticity.java Example Code ClearBase OEChem::OEMCMolBaseT OEChem::OEMol ClearBits OESystem::OEBitVector ClearConstraints OEChem::OECliqueSearch OEChem::OEMCSSearch OEChem::OESubSearch ClearDefaults OESystem::OEParameter ClearMCMol OEChem::OEMCMolBaseT OEChem::OEMol ClearMolBase OEChem::OEMCMolBaseT OEChem::OEMol ClearStartingMaterial OEChem::OELibraryGen ClearValues OESystem::OEParameter CliqueSearch.java Example Code close OEChem::oemolistream OEChem::oemolithread OEChem::oemolostream OEChem::oemolothread OEChem::oemolstreambase OEPlatform::oeistream OEPlatform::oeostream CombineMols OEChem::OEAbsCanonicalConfTest OEChem::OEAbsoluteConfTest OEChem::OEConfTestBase OEChem::OEDefaultConfTest OEChem::OEIsomericConfTest CompareMols OEChem::OEAbsCanonicalConfTest OEChem::OEAbsoluteConfTest OEChem::OEConfTestBase OEChem::OEDefaultConfTest OEChem::OEIsomericConfTest Compress OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol OEChem::OETrans ConfBoundingBox.java Example Code connected components identification Constructors OEBio::OEHasPDBAtomIndex OEBio::OEHierChain OEBio::OEHierFragment OEBio::OEHierResidue OEBio::OEHierView OEBio::OEIsBackboneAtom OEBio::OESequenceAlignment OEChem::OEAbsoluteConfTest OEChem::OEAtomIsInResidue OEChem::OECliqueSearch OEChem::OECoordArray OEChem::OEExprBase OEChem::OEFuzzy OEChem::OEGetNbrAtom OEChem::OEGraphMol OEChem::OEHasAtomName OEChem::OEHasAtomStereoSpecified OEChem::OEHasAtomicNum OEChem::OEHasBondStereoSpecified OEChem::OEHasChainID OEChem::OEHasFragmentNumber OEChem::OEHasIdx OEChem::OEHasMapIdx OEChem::OEHasOrder OEChem::OEHasResidueNumber OEChem::OEInSamePart OEChem::OEIsMember OEChem::OEIsMemberPtr OEChem::OEIsRGroup OEChem::OEIsRotor OEChem::OEIsomericConfTest OEChem::OELibraryGen OEChem::OELingoSim OEChem::OEMCSMaxAtomsCompleteCycles OEChem::OEMCSMaxBondsCompleteCycles OEChem::OEMCSSearch OEChem::OEMatch OEChem::OEMatchFunc OEChem::OEMatchPair OEChem::OEMol OEChem::OENbrs OEChem::OENearestNbrs OEChem::OENthAtom OEChem::OEPartPredT OEChem::OEQMol OEChem::OEQMolBase OEChem::OEQuaternion OEChem::OEResidue OEChem::OERotMatrix OEChem::OESDDataPair OEChem::OESubSearch OEChem::OETrans OEChem::OETranslation OEChem::OEUniMolecularRxn OEChem::OEVectorBindings OEChem::oemolistream OEChem::oemolithread OEChem::oemolostream OEChem::oemolothread OEPlatform::OECondition OEPlatform::OELock OEPlatform::OEMutex OEPlatform::OEThread OEPlatform::OEThreadLocal OEPlatform::OETryMutex OEPlatform::oeifstream OEPlatform::oeigzstream OEPlatform::oeisstream OEPlatform::oeistream OEPlatform::oeiwrapperstream OEPlatform::oeofstream OEPlatform::oeogzstream OEPlatform::oeosstream OEPlatform::oeostream OEPlatform::oeowrapperstream OEPlatform::oestream OESystem::OEAnd OESystem::OEBase OESystem::OEBaseData OESystem::OEBaseDataT OESystem::OEBinaryAnd OESystem::OEBinaryNot OESystem::OEBinaryOr OESystem::OEBitVector OESystem::OEBoundedBuffer OESystem::OEColor OESystem::OEDots OESystem::OEErrorHandler OESystem::OEErrorHandlerImplBase OESystem::OEGaussian OESystem::OEGaussianContainer OESystem::OEGrid OESystem::OEInterface OESystem::OEIter OESystem::OEIterBase OESystem::OEMultiGrid OESystem::OENot OESystem::OEOr OESystem::OEProtectedBuffer OESystem::OERandom OESystem::OEScalarGrid OESystem::OESkewGrid OESystem::OEStopwatch OESystem::OEWallTimer

Copy OESystem::OEIter OESystem::OEIterBase Count OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol OESystem::OEErrorHandler OESystem::OEErrorHandlerImplBase CountBits OESystem::OEBitVector CreateCopy OEBio::OEHasPDBAtomIndex OEBio::OEIsAlphaCarbon OEBio::OEIsBackboneAtom OEChem::OEAbsCanonicalConfTest OEChem::OEAbsoluteConfTest OEChem::OEAtomIsInResidue OEChem::OEAtomIsInRing OEChem::OEBondIsInRing OEChem::OEConfBaseT OEChem::OEConfTestBase OEChem::OEDefaultConfTest OEChem::OEExprBase OEChem::OEGetNbrAtom OEChem::OEGraphMol OEChem::OEHasAtomName OEChem::OEHasAtomStereoSpecified OEChem::OEHasAtomicNum OEChem::OEHasBondStereoSpecified OEChem::OEHasChainID OEChem::OEHasFragmentNumber OEChem::OEHasIdx OEChem::OEHasMapIdx OEChem::OEHasOrder OEChem::OEHasResidueNumber OEChem::OEInSamePart OEChem::OEIsAromaticAtom OEChem::OEIsAromaticBond OEChem::OEIsCAlpha OEChem::OEIsCarbon OEChem::OEIsChiralAtom OEChem::OEIsChiralBond OEChem::OEIsHalide OEChem::OEIsHalogen OEChem::OEIsHeavy OEChem::OEIsHydrogen OEChem::OEIsMember OEChem::OEIsMemberPtr OEChem::OEIsNitrogen OEChem::OEIsOxygen OEChem::OEIsPhosphorus OEChem::OEIsPolar OEChem::OEIsPolarHydrogen OEChem::OEIsRGroup OEChem::OEIsRotor OEChem::OEIsSulfur OEChem::OEIsomericConfTest OEChem::OEMCMolBaseT OEChem::OEMCSFunc OEChem::OEMCSMaxAtoms OEChem::OEMCSMaxAtomsCompleteCycles OEChem::OEMCSMaxBonds OEChem::OEMCSMaxBondsCompleteCycles OEChem::OEMatch OEChem::OEMatchBase OEChem::OEMatchFunc OEChem::OEMol OEChem::OEMolBase OEChem::OENthAtom OEChem::OEPartPredT OEChem::OEQMol OEChem::OEQMolBase OEChem::OEQuaternion OEChem::OERotMatrix OEChem::OETransBase OEChem::OETranslation OESystem::OEAnd OESystem::OEBase OESystem::OEBaseData OESystem::OEBaseDataT OESystem::OEBinaryAnd OESystem::OEBinaryFalse OESystem::OEBinaryFunction OESystem::OEBinaryNot OESystem::OEBinaryOr OESystem::OEBinaryPredicate OESystem::OEColor OESystem::OEErrorHandlerImplBase OESystem::OEFixedGrid OESystem::OEFixedMultiGrid OESystem::OEGaussian OESystem::OEGaussianContainer OESystem::OEGrid OESystem::OEGridBase OESystem::OEMultiGrid OESystem::OENot OESystem::OEOr OESystem::OEParameter OESystem::OEScalarGrid OESystem::OESkewGrid OESystem::OEUnaryFunction OESystem::OEUnaryPredicate CreateIsoSMILESFromOEGraphMolRW.java Example Code CreateOEGraphMol.java Example Code CreateOEGraphMolFromSMILES.java Example Code CreateOEGraphMolFromSMILESAromatic.java Example Code CreateOEGraphMolFromSMILESCheck.java Example Code CreatePredicateCopy OESystem::OEBinaryPredicate OESystem::OEUnaryPredicate CreateSMILESFromOEGraphMol.java Example Code CreateSMILESFromOEGraphMolRW.java Example Code CreateSMILESFromOEGraphMolRWBetter.java Example Code CreatingAtoms.java Example Code CreatingAtoms2.java Example Code cyclic membership

D

Daylight Daylight SMILES Debug OESystem::OEErrorHandler Delete OEChem::OEConfBaseT DeleteAtom OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol DeleteBond OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol DeleteConf OEChem::OEMCMolBaseT OEChem::OEMol

DeleteConfs OEChem::OEMCMolBaseT OEChem::OEMol DeleteData OEChem::OEGraphMol OEChem::OEMol OEChem::OEQMol OESystem::OEBase DeleteGaussian OESystem::OEGaussianContainer OESystem::OEGaussianContainerBase DeleteGaussians OESystem::OEGaussianContainer OESystem::OEGaussianContainerBase DeleteInterface OESystem::OEInterface DeleteParameter OESystem::OEInterface

E

Elapsed OESystem::OEStopwatch OESystem::OEWallTimer ElementToGridIdx OESystem::OEGridBase OESystem::OESkewGrid ElementToSpatialCoord OESystem::OEGridBase OESystem::OESkewGrid Empty OESystem::OEBoundedBuffer eof OEChem::oemolistream OEPlatform::oestream Error OESystem::OEErrorHandler Example Code ASCIIWriter.java Aromaticity.java AtomMap.java AtomSubsetEvil.java AtomSubsetGood.java ClearAromaticity.java CliqueSearch.java ConfBoundingBox.java CreateIsoSMILESFromOEGraphMolRW.java CreateOEGraphMol.java CreateOEGraphMolFromSMILES.java CreateOEGraphMolFromSMILESAromatic.java CreateOEGraphMolFromSMILESCheck.java CreateSMILESFromOEGraphMol.java CreateSMILESFromOEGraphMolRW.java CreateSMILESFromOEGraphMolRWBetter.java CreatingAtoms.java CreatingAtoms2.java FilterConfs.java GetTitle.java LoopingOverBonds.java LoopingOverCarbon.java LoopingOverMolAtomsBonds.java LoopingOverNeighbors1.java LoopingOverNeighbors2.java MCSSOEExprOpts.java MDLQuerySearchMapping.java MDLQuerySearchSingleMatch.java MaximumCommonSS.java MolBaseType.java MolFind.java MultiCoreMolFind.java NewConfFromCoords.java Normalization.java PerceiveAromRingSystems.java PipelineMolFind.java PrintAtomStereo.java ReactionsNonUnique.java ReactionsRXN.java ReactionsReactantTrace.java ReactionsUsingExplH.java ReactionsUsingImplH.java ReactionsUsingValenceCorr.java ReadInMultiConf.java ReadMolIntoMemory.java ReadWriteCommandLineArgs.java ReadWriteCompressedFiles.java ReadWriteFlavors.java ReadWriteSettingFormats.java ReadWriteStdinStdoutFormatControl.java ReadWriteToFiles.java ReuseMolecule.java ReuseMoleculeClear.java ReverseIteration.java ScalarGridCtor.java SubstructureSearch.java ThreadedMolFind.java XYZWriter.java oemolstream.java

explicit atom degree explicit hydrogen count explicit valence Extract OEChem::OEQuaternion OEChem::OERotMatrix OEChem::OETrans OEChem::OETransBase OEChem::OETranslation

F

Factory OESystem::OEInterface Fatal OESystem::OEErrorHandler fd OEPlatform::oeifstream OEPlatform::oeofstream FilterConfs.java Example Code FirstBit OESystem::OEBitVector

flush OEChem::oemolostream OEPlatform::oeostream formal charge, [1] FromHexString OESystem::OEBitVector Full OESystem::OEBoundedBuffer

G

Gasteiger charge get OEPlatform::oeistream Get OEChem::OEVectorBindings OESystem::OEBoundedBuffer OESystem::OEInterface OESystem::OEProtectedBuffer GetA OESystem::OEColor GetActive OEChem::OEMCMolBaseT OEChem::OEMol GetAliases OESystem::OEParameter GetAlternateLocation OEChem::OEResidue GetArg OEPlatform::OEThread GetAssignMapIdx OEChem::OELibraryGen GetAtom OEBio::OEHierChain OEBio::OEHierFragment OEBio::OEHierResidue OEBio::OEHierView OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol GetAtomicNum OEChem::OEAtomBase GetAtoms OEBio::OEHierResidue OEBio::OEHierView OEChem::OEAtomBase OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMatch OEChem::OEMatchBase OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol GetB OESystem::OEColor GetBackboneMatch OEBio::OESequenceAlignment GetBFactor OEChem::OEResidue GetBgn OEChem::OEBondBase OEChem::OENbrs GetBgnIdx OEChem::OEBondBase GetBigStep OESystem::OEDots GetBinaryIOHandler OEChem::oemolstreambase GetBond OEChem::OEAtomBase OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol GetBonds OEChem::OEAtomBase OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMatch OEChem::OEMatchBase OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol GetBoolData OEChem::OEGraphMol OEChem::OEMol OEChem::OEQMol OESystem::OEBase GetBrief OESystem::OEInterface OESystem::OEParameter getbuffer OEPlatform::oeisstream getbyte OEChem::oemolistream OEPlatform::oeistream GetCAlphaMatch OEBio::OESequenceAlignment GetCenter OESystem::OEGaussian OESystem::OEGaussianBase GetChainID OEBio::OEHierChain OEChem::OEResidue GetChains OEBio::OEHierView GetColor OESystem::OEGaussian OESystem::OEGaussianBase GetColors OESystem::OEGaussianContainer OESystem::OEGaussianContainerBase GetCommand OESystem::OEParameter GetConf OEChem::OEMCMolBaseT OEChem::OEMol GetConfs OEChem::OEMCMolBaseT OEChem::OEMol GetConfTest OEChem::oemolistream GetCoords OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol OESystem::OEGaussianContainer OESystem::OEGaussianContainerBase GetCounts OESystem::OEDots GetData OEChem::OEGraphMol OEChem::OEMol OEChem::OEQMol OESystem::OEBase OESystem::OEBaseDataT OESystem::OEBitVector GetDataIter OEChem::OEGraphMol OEChem::OEMol OEChem::OEQMol OESystem::OEBase GetDataType OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMol OEChem::OEQMol OESystem::OEBase OESystem::OEBaseData OESystem::OEBaseDataT OESystem::OEFixedGrid OESystem::OEFixedMultiGrid OESystem::OEGaussian OESystem::OEGaussianBase OESystem::OEGaussianContainer OESystem::OEGaussianContainerBase OESystem::OEGrid OESystem::OEGridAbstractBase OESystem::OEGridBase OESystem::OEMultiGrid OESystem::OEScalarGrid OESystem::OESkewGrid GetDefault OESystem::OETypedParameter GetDefaults OESystem::OETypedParameter GetDegree OEChem::OEAtomBase GetDetail OESystem::OEInterface OESystem::OEParameter GetDim OESystem::OEGridAbstractBase OESystem::OEGridBase OESystem::OESkewGrid GetDimension OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol GetDist2 OEChem::OENbrs GetDoubleData OEChem::OEGraphMol OEChem::OEMol OEChem::OEQMol OESystem::OEBase GetElement OESystem::OEParameter GetEnd OEChem::OEBondBase OEChem::OENbrs GetEndIdx OEChem::OEBondBase GetEnergy OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol GetExplicitDegree OEChem::OEAtomBase GetExplicitHCount OEChem::OEAtomBase GetExplicitHydrogens OEChem::OELibraryGen GetExplicitValence OEChem::OEAtomBase GetExpr OEChem::OEQBase GetExtend OEBio::OESequenceAlignment GetFlavor OEChem::oemolstreambase GetFloatData OEChem::OEGraphMol OEChem::OEMol OEChem::OEQMol OESystem::OEBase GetFormalCharge OEChem::OEAtomBase GetFormat OEChem::oemolstreambase GetFragmentNumber OEBio::OEHierFragment OEChem::OEResidue GetFragments OEBio::OEHierChain OEBio::OEHierView GetG OESystem::OEColor GetGap OEBio::OESequenceAlignment GetGaussians OESystem::OEGaussianContainer OESystem::OEGaussianContainerBase Getgz OEChem::oemolstreambase GetHandlerImpl OESystem::OEErrorHandler GetHasDefault OESystem::OEParameter GetHasValue OESystem::OEParameter GetHvyDegree OEChem::OEAtomBase GetHvyValence OEChem::OEAtomBase GetHyb OEChem::OEAtomBase GetIdx OEChem::OEAtomBase OEChem::OEBondBase OEChem::OEConfBaseT GetIllegalRanges OESystem::OEParameter GetIllegalValues OESystem::OEParameter GetImplicitHCount OEChem::OEAtomBase GetInsertCode OEChem::OEResidue GetIntData OEChem::OEGraphMol OEChem::OEMol OEChem::OEQMol OESystem::OEBase GetInterface OESystem::OEInterface GetInterfaces OESystem::OEInterface GetIntType OEChem::OEAtomBase OEChem::OEBondBase GetInverse OEChem::OEQuaternion OEChem::OERotMatrix OEChem::OETrans OEChem::OETransBase OEChem::OETranslation GetIsList OESystem::OEParameter GetIsotope OEChem::OEAtomBase GetIStream OEChem::oemolithread GetKeyless OESystem::OEParameter GetLegalRanges OESystem::OEParameter GetLegalValues OESystem::OEParameter GetLevel OESystem::OEErrorHandler OESystem::OEErrorHandlerImplBase getline OEChem::oemolistream OEPlatform::oeistream GetList OESystem::OEInterface GetMapIdx OEChem::OEAtomBase GetMaxAtomIdx OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol GetMaxBondIdx OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol

GetMaxConfIdx OEChem::OEMCMolBaseT OEChem::OEMol GetMaxMatches OEChem::OECliqueSearch OEChem::OEMCSSearch OEChem::OESubSearch GetMaxSeqIdx OEBio::OESequenceAlignment GetMCMol OEChem::OEConfBaseT GetMCMolBases OEChem::oemolistream GetMethod OEBio::OESequenceAlignment GetMid OESystem::OEGridAbstractBase OESystem::OEGridBase OESystem::OESkewGrid GetMinAtoms OEChem::OECliqueSearch OEChem::OEMCSSearch GetModelNumber OEChem::OEResidue GetMol OEChem::oemolthreadbase GetMolBases OEChem::oemolistream GetMolStream OEChem::oemolithread OEChem::oemolothread GetName OEChem::OEAtomBase OEChem::OEResidue OESystem::OEInterface OESystem::OEParameter GetNbr OEChem::OEBondBase GetNbrs OEChem::OENearestNbrs GetNextMol OEChem::oemolistream GetNumGrids OESystem::OEFixedMultiGrid GetOccupancy OEChem::OEResidue GetOEResidue OEBio::OEHierChain OEBio::OEHierFragment OEBio::OEHierResidue GetOrder OEChem::OEBondBase GetOrderPriority OESystem::OEInterface OESystem::OEParameter GetOStream OEChem::oemolothread GetPackedColor OESystem::OEColor GetParameter OESystem::OEInterface GetParameters OESystem::OEInterface GetParent OEChem::OEAtomBase OEChem::OEBondBase GetParentAtom OEChem::OEQAtomBase GetParentBond OEChem::OEQBondBase GetPartialCharge OEChem::OEAtomBase GetPattern OEChem::OECliqueSearch OEChem::OEMCSSearch OEChem::OESubSearch GetPatternAtoms OEChem::OEMatchBase GetPatternBonds OEChem::OEMatchBase GetPrefactor OESystem::OEGaussian OESystem::OEGaussianBase GetPrefactors OESystem::OEGaussianContainer OESystem::OEGaussianContainerBase GetProducts OEChem::OELibraryGen GetQAtoms OEChem::OEQAtomBase OEChem::OEQMol OEChem::OEQMolBase GetQBonds OEChem::OEQAtomBase OEChem::OEQMol OEChem::OEQMolBase GetQuaternion OEChem::OEQuaternion GetR OESystem::OEColor GetRadius OEChem::OEAtomBase GetReadFailureCt OEChem::oemolistream GetReentrant OESystem::OESkewGrid GetRemoveUnmappedFragments OEChem::OELibraryGen GetRequired OESystem::OEParameter GetResidue OEBio::OEHierChain OEBio::OEHierFragment OEBio::OEHierView GetResidueName OEBio::OEHierResidue GetResidueNumber OEBio::OEHierResidue OEChem::OEResidue GetResidues OEBio::OEHierFragment OEBio::OEHierView GetReturn OEPlatform::OEThread GetRGBA OESystem::OEColor GetRotMatrix OEChem::OERotMatrix GetRxnRole OEChem::OEAtomBase GetSaveRange OEChem::OECliqueSearch OEChem::OEMCSSearch GetScore OEBio::OESequenceAlignment GetSecondaryStructure OEChem::OEResidue GetSerialNumber OEChem::OEResidue GetSetting OESystem::OETypedParameter GetSettings OESystem::OETypedParameter GetSize OESystem::OEBaseData OESystem::OEBaseDataT OESystem::OEBitVector OESystem::OEGridAbstractBase OESystem::OEGridBase OESystem::OESkewGrid GetSmallStep OESystem::OEDots GetSpaceGroup OESystem::OESkewGrid GetSpacing OESystem::OEGridAbstractBase OESystem::OEGridBase OESystem::OESkewGrid GetStartingMaterial OEChem::OELibraryGen GetStereo OEChem::OEAtomBase OEChem::OEBondBase GetStrict OESystem::OEErrorHandler OESystem::OEErrorHandlerImplBase GetString OEChem::oemolostream OEChem::oemolothread GetStringData OEChem::OEGraphMol OEChem::OEMol OEChem::OEQMol OESystem::OEBase GetStringDefault OESystem::OEParameter GetStringDefaults OESystem::OEParameter GetStringValue OESystem::OEParameter GetStringValues OESystem::OEParameter GetSymmetryClass OEChem::OEAtomBase GetTag OEChem::OESDDataPair OESystem::OEBaseData GetTargetAtoms OEChem::OEMatchBase GetTargetBonds OEChem::OEMatchBase GetText OESystem::OEColor GetTitle OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol OESystem::OEGridAbstractBase OESystem::OEGridBase OESystem::OESkewGrid GetTitle.java Example Code GetTitleSeparator OEChem::OELibraryGen gettoken OEPlatform::oeistream GetTorsion OEChem::OEConfBaseT GetTotalHCount OEChem::OEAtomBase GetTransform OEChem::OEConfBaseT GetTransforms OEChem::OETrans GetTranslation OEChem::OETranslation GetType OEChem::OEAtomBase OEChem::OEBondBase OEChem::OEExprBase OEChem::OELingoSim OESystem::OEScalarGrid OESystem::OESkewGrid GetTypedParameter OESystem::OEInterface GetUnitCell OESystem::OESkewGrid GetValence OEChem::OEAtomBase GetValenceCorrection OEChem::OELibraryGen GetValue OEChem::OESDDataPair OEPlatform::OEOnce OESystem::OETypedParameter GetValues OESystem::OEFixedGrid OESystem::OEFixedMultiGrid OESystem::OESkewGrid OESystem::OETypedParameter GetVisibility OESystem::OEParameter GetWidth OESystem::OEGaussian OESystem::OEGaussianBase GetWidths OESystem::OEGaussianContainer OESystem::OEGaussianContainerBase GetX OESystem::OEGaussian OESystem::OEGaussianBase OESystem::OEGridBase GetXDim OESystem::OEGridAbstractBase OESystem::OEGridBase OESystem::OESkewGrid GetXIdx OESystem::OEGridBase GetXInc OESystem::OEGridBase GetXMax OESystem::OEGridBase GetXMid OESystem::OEGridAbstractBase OESystem::OEGridBase OESystem::OESkewGrid GetXMin OESystem::OEGridBase GetY OESystem::OEGaussian OESystem::OEGaussianBase OESystem::OEGridBase GetYDim OESystem::OEGridAbstractBase OESystem::OEGridBase OESystem::OESkewGrid GetYIdx OESystem::OEGridBase GetYInc OESystem::OEGridBase GetYMax OESystem::OEGridBase GetYMid OESystem::OEGridAbstractBase OESystem::OEGridBase OESystem::OESkewGrid GetYMin OESystem::OEGridBase GetZ OESystem::OEGaussian OESystem::OEGaussianBase OESystem::OEGridBase GetZDim OESystem::OEGridAbstractBase OESystem::OEGridBase OESystem::OESkewGrid GetZIdx OESystem::OEGridBase GetZInc OESystem::OEGridBase GetZMax OESystem::OEGridBase GetZMid OESystem::OEGridAbstractBase OESystem::OEGridBase OESystem::OESkewGrid GetZMin OESystem::OEGridBase GridIdxToElement OESystem::OEGridBase GridIdxToSpatialCoord OESystem::OEGridBase

H

Has OESystem::OEInterface HasData OEChem::OEGraphMol OEChem::OEMol OEChem::OEQMol OESystem::OEBase HasNextMol OEChem::oemolistream HasPerceived OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol

HasSpaceGroup OESystem::OESkewGrid HasStereoSpecified OEChem::OEAtomBase OEChem::OEBondBase HasTitle OEChem::OEConfBaseT HasUnitCell OESystem::OESkewGrid

I

implicit hydrogens IncrementCount OESystem::OEErrorHandlerImplBase IncrementReadFailureCt OEChem::oemolistream Info OESystem::OEErrorHandler Init OEChem::OECliqueSearch OEChem::OELibraryGen OEChem::OELingoSim OEChem::OEMCSSearch OEChem::OESubSearch OEChem::OEUniMolecularRxn OEPlatform::OEOnce integer atom type integer bond type IsAromatic OEChem::OEAtomBase OEChem::OEBondBase IsBitOn OESystem::OEBitVector IsCarbon OEChem::OEAtomBase IsChiral OEChem::OEAtomBase OEChem::OEBondBase IsConnected OEChem::OEAtomBase IsDataType OEChem::OEAtomBase OEChem::OEBondBase OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMol OEChem::OEMolBase OEChem::OEQAtomBase OEChem::OEQBondBase OEChem::OEQMol OEChem::OEQMolBase OESystem::OEBase OESystem::OEFixedGrid OESystem::OEFixedMultiGrid OESystem::OEGaussian OESystem::OEGaussianBase OESystem::OEGaussianContainer OESystem::OEGaussianContainerBase OESystem::OEGrid OESystem::OEGridAbstractBase OESystem::OEGridBase OESystem::OEMultiGrid OESystem::OEScalarGrid OESystem::OESkewGrid IsDeleted OEChem::OEAtomBase OEChem::OEBondBase OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol

IsEmpty OESystem::OEBitVector IsEquivalent OEChem::OEExprBase IsHalogen OEChem::OEAtomBase IsHetAtom OEChem::OEResidue IsHydrogen OEChem::OEAtomBase IsInGrid OESystem::OEGridBase IsInRing OEChem::OEAtomBase OEChem::OEBondBase IsLegalString OESystem::OEParameter IsMetal OEChem::OEAtomBase IsNitrogen OEChem::OEAtomBase isotopic mass IsOxygen OEChem::OEAtomBase IsPhosphorus OEChem::OEAtomBase IsPolar OEChem::OEAtomBase IsPolarHydrogen OEChem::OEAtomBase IsRegular OESystem::OESkewGrid IsRotor OEChem::OEBondBase IsRxn OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol IsSet OESystem::OEParameter IsSetToString OESystem::OEParameter IsSpacingSet OESystem::OEGridAbstractBase OESystem::OEGridBase OESystem::OESkewGrid IsSulfur OEChem::OEAtomBase IsTitleSet OESystem::OEGridBase OESystem::OESkewGrid IsValid OEChem::OELingoSim IsXMidSet OESystem::OEGridBase IsYMidSet OESystem::OEGridBase IsZMidSet OESystem::OEGridBase

J

Join OEPlatform::OEThread

K

Kekule form Kekule SMILES

kekulization

L

Lap OESystem::OEStopwatch OESystem::OEWallTimer LastBit OESystem::OEBitVector length OEPlatform::oestream Load OESystem::OEParameter LoadDefault OESystem::OEParameter LoadValue OESystem::OEParameter

LoopingOverBonds.java Example Code LoopingOverCarbon.java Example Code LoopingOverMolAtomsBonds.java Example Code LoopingOverNeighbors1.java Example Code LoopingOverNeighbors2.java Example Code

M

Match OEChem::OECliqueSearch OEChem::OEMCSSearch OEChem::OESubSearch maximum atom index maximum bond index maximum common substructure search MaximumCommonSS.java Example Code MCMol OEChem::OEMol MCSS MCSSOEExprOpts.java Example Code MDL query MDLQuerySearchMapping.java Example Code

MDLQuerySearchSingleMatch.java Example Code MolBaseType.java Example Code molecule dimension molecule energy molecule title, [1] MolFind.java Example Code Msg OESystem::OEErrorHandler OESystem::OEErrorHandlerImplBase MultiCoreMolFind.java Example Code

N

NegateBits OESystem::OEBitVector NewAtom OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol NewBond OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol NewConf OEChem::OEMCMolBaseT OEChem::OEMol NewConfFromCoords.java Example Code NextBit OESystem::OEBitVector NextFloat OESystem::OERandom NextInt OESystem::OERandom Normalization.java Example Code

NumAtoms OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMatch OEChem::OEMatchBase OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol number of atoms number of bonds NumBonds OEChem::OEConfBaseT OEChem::OEGraphMol OEChem::OEMCMolBaseT OEChem::OEMatch OEChem::OEMatchBase OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol NumConfs OEChem::OEMCMolBaseT OEChem::OEMol NumGaussians OESystem::OEGaussianContainer OESystem::OEGaussianContainerBase NumReactants OEChem::OELibraryGen

O

OEAddExplicitHydrogens OEAssignAromaticFlags, [1] OEAtomBase OEBio::OEAssumption OEBio::OEAssumption::BondedResidue OEBio::OEAssumption::Default OEBio::OEAssumption::None OEBio::OEAssumption::PDBOrder OEBio::OEAssumption::ResPerceived OEBio::OECopyCrystalSymmetry OEBio::OEExpandCrystalSymmetry OEBio::OEGetAlignment OEBio::OEGetAlignmentMethodName OEBio::OEGetChis OEBio::OEGetCrystalSymmetry OEBio::OEGetPhi OEBio::OEGetProteinTorsionName OEBio::OEGetPsi OEBio::OEGetResidueAtoms OEBio::OEGetRotamers OEBio::OEGetSpaceGroup OEBio::OEGetSpaceGroupNumber OEBio::OEGetTorsion OEBio::OEHasBondedResidues OEBio::OEHasCrystalSymmetry OEBio::OEHasPDBAtomIndex Constructors CreateCopy operator() OEBio::OEHierChain Constructors GetAtom GetChainID GetFragments GetOEResidue GetResidue operator= OEBio::OEHierFragment Constructors GetAtom GetFragmentNumber GetOEResidue GetResidue GetResidues operator= OEBio::OEHierResidue Constructors GetAtom GetAtoms GetOEResidue GetResidueName GetResidueNumber operator= OEBio::OEHierView Constructors GetAtom GetAtoms GetChains GetFragments GetResidue GetResidues operator= OEBio::OEIsAlphaCarbon CreateCopy operator() OEBio::OEIsBackboneAtom Constructors CreateCopy operator() OEBio::OEIsStandardProteinResidue OEBio::OEProtTorType OEBio::OEProtTorType::Chi1 OEBio::OEProtTorType::Chi2 OEBio::OEProtTorType::Chi3 OEBio::OEProtTorType::Chi4 OEBio::OEProtTorType::Chi5 OEBio::OEProtTorType::Max OEBio::OEProtTorType::Omega OEBio::OEProtTorType::Phi OEBio::OEProtTorType::Psi OEBio::OEProtTorType::Unknown OEBio::OERMSD OEBio::OESeqAlignmentMethod OEBio::OESeqAlignmentMethod::BLOSUM62 OEBio::OESeqAlignmentMethod::GONNET OEBio::OESeqAlignmentMethod::Identity OEBio::OESeqAlignmentMethod::None OEBio::OESeqAlignmentMethod::PAM250 OEBio::OESequenceAlignment Clear Constructors GetBackboneMatch GetCAlphaMatch GetExtend GetGap GetMaxSeqIdx GetMethod GetScore SetImpl operator= OEBio::OESetCrystalSymmetry OEBio::OESetRotamer OEBio::OESetTorsion OEBio::OESwapAIEResidueAtoms OEBio::OEWriteAlignment OEBondBase OEBuildMDLQueryExpression OEBuildMDLQueryExpressions OEChem::OE3DToAtomStereo OEChem::OE3DToBondStereo OEChem::OE3DToInternalStereo OEChem::OEAbsCanonicalConfTest CombineMols CompareMols CreateCopy OEChem::OEAbsoluteConfTest CombineMols CompareMols Constructors CreateCopy OEChem::OEAcyclicPath OEChem::OEAddExplicitHydrogens OEChem::OEAddMols OEChem::OEAddPDBData OEChem::OEAddSDData OEChem::OEAroType OEChem::OEAroType::As OEChem::OEAroType::C OEChem::OEAroType::C2_Minus OEChem::OEAroType::C2_Plus OEChem::OEAroType::C3_Minus OEChem::OEAroType::C3_Plus OEChem::OEAroType::C_EnegExo OEChem::OEAroType::C_Exo OEChem::OEAroType::MAXTYPE OEChem::OEAroType::N_Minus OEChem::OEAroType::N_Oxide OEChem::OEAroType::N_Oxide_Plus OEChem::OEAroType::N_Plus OEChem::OEAroType::N_Pyridine OEChem::OEAroType::N_Pyrole OEChem::OEAroType::O OEChem::OEAroType::O_Plus OEChem::OEAroType::P_Minus OEChem::OEAroType::P_Oxide OEChem::OEAroType::P_Oxide_Plus OEChem::OEAroType::P_Plus OEChem::OEAroType::P_Pyridine OEChem::OEAroType::P_Pyrole OEChem::OEAroType::S OEChem::OEAroType::S_Oxide_Plus OEChem::OEAroType::S_Plus OEChem::OEAroType::Se OEChem::OEAroType::Se_Plus OEChem::OEAroType::Si OEChem::OEAroType::Te OEChem::OEAroType::Te_Plus OEChem::OEAroType::Undefined OEChem::OEAssignAromaticFlags OEChem::OEAssignBondiVdWRadii OEChem::OEAssignCovalentRadii OEChem::OEAssignDelphiRadii OEChem::OEAssignFormalCharges OEChem::OEAssignHonigIonicCavityRadii OEChem::OEAssignHybridization OEChem::OEAssignImplicitHydrogens OEChem::OEAssignMDLHydrogens OEChem::OEAssignPaulingVdWRadii OEChem::OEAssignResidueNumbers OEChem::OEAssignSerialNumbers OEChem::OEAssignZap9Radii OEChem::OEAtomBase AddBond Clear GetAtomicNum GetAtoms GetBond GetBonds GetDegree GetExplicitDegree GetExplicitHCount GetExplicitValence GetFormalCharge GetHvyDegree GetHvyValence GetHyb GetIdx GetImplicitHCount GetIntType GetIsotope GetMapIdx GetName GetParent GetPartialCharge GetRadius GetRxnRole GetStereo GetSymmetryClass GetTotalHCount GetType GetValence HasStereoSpecified IsAromatic IsCarbon IsChiral IsConnected IsDataType IsDeleted IsHalogen IsHydrogen IsInRing IsMetal IsNitrogen IsOxygen IsPhosphorus IsPolar IsPolarHydrogen IsSulfur OrderBonds RemoveBond SetAromatic SetAtomicNum SetChiral SetFormalCharge SetHyb SetIdx SetImplicitHCount SetInRing SetIntType SetIsotope SetMapIdx SetName SetPartialCharge SetRadius SetRxnRole SetStereo SetSymmetryClass SetType Sweep operator= OEChem::OEAtomGetMDLParity OEChem::OEAtomGetResidue OEChem::OEAtomGetSmallestRingSize OEChem::OEAtomIsInAromaticRingSize OEChem::OEAtomIsInResidue Constructors CreateCopy operator() OEChem::OEAtomIsInRing CreateCopy operator() OEChem::OEAtomIsInRingSize OEChem::OEAtomSetMDLParity OEChem::OEAtomSetResidue OEChem::OEAtomStereo OEChem::OEAtomStereo::All OEChem::OEAtomStereo::Left OEChem::OEAtomStereo::LeftHanded OEChem::OEAtomStereo::Right OEChem::OEAtomStereo::RightHanded OEChem::OEAtomStereo::Tetra OEChem::OEAtomStereo::Tetrahedral OEChem::OEAtomStereo::Undefined OEChem::OEBAtomIntTypeOpts OEChem::OEBDefaultOpts OEChem::OEBGZipCompressOpts OEChem::OEBondBase Clear GetBgn GetBgnIdx GetEnd GetEndIdx GetIdx GetIntType GetNbr GetOrder GetParent GetStereo GetType HasStereoSpecified IsAromatic IsChiral IsDataType IsDeleted IsInRing IsRotor SetAromatic SetBgn SetChiral SetEnd SetIdx SetInRing SetIntType SetOrder SetStereo SetType SwapEnds Sweep operator= OEChem::OEBondGetSmallestRingSize OEChem::OEBondIsInAromaticRingSize OEChem::OEBondIsInRing CreateCopy operator() OEChem::OEBondIsInRingSize OEChem::OEBondStereo OEChem::OEBondStereo::All OEChem::OEBondStereo::Cis OEChem::OEBondStereo::CisTrans OEChem::OEBondStereo::Hash OEChem::OEBondStereo::Trans OEChem::OEBondStereo::Undefined OEChem::OEBondStereo::Wedge OEChem::OEBRotCompressOpts OEChem::OEBuildMDLQueryExpressions OEChem::OECalcCartesianCoord OEChem::OECalcInternalCoord OEChem::OECalculateMolecularWeight OEChem::OECanonicalOrderAtoms OEChem::OECanonicalOrderBonds OEChem::OECenter OEChem::OEChem OEChem::OEChem::FzFalse OEChem::OEChem::FzMaybe OEChem::OEChem::FzTrue OEChem::OEChem::OEAroModelDaylight OEChem::OEChem::OEAroModelMDL OEChem::OEChem::OEAroModelMMFF OEChem::OEChem::OEAroModelOpenEye OEChem::OEChem::OEAroModelTripos OEChem::OEChemGetArch OEChem::OEChemGetLicensee OEChem::OEChemGetPlatform OEChem::OEChemGetRelease OEChem::OEChemGetSite OEChem::OEChemGetVersion OEChem::OEChemIsLicensed OEChem::OEClearAromaticFlags OEChem::OEClearPartialCharges OEChem::OEClearPDBData OEChem::OEClearResidue OEChem::OEClearResidues OEChem::OEClearRotorCompressData OEChem::OEClearSDData OEChem::OECliqueSearch AddConstraint ClearConstraints Constructors GetMaxMatches GetMinAtoms GetPattern GetSaveRange Init Match SetMCSFunc SetMaxMatches SetMinAtoms SetSaveRange SingleMatch operator bool operator= OEChem::OEComposeDMCSFromCliques OEChem::OEConfBaseT AddAtom AddBond Clear Compress Count CreateCopy Delete DeleteAtom DeleteBond GetAtom GetAtoms GetBond GetBonds GetCoords GetDataType GetDimension GetEnergy GetIdx GetMCMol GetMaxAtomIdx GetMaxBondIdx GetTitle GetTorsion GetTransform HasPerceived HasTitle IsDataType IsDeleted IsRxn NewAtom NewBond NumAtoms NumBonds OrderAtoms OrderBonds RemoveAtom RemoveBond ResetPerceived SetCoords SetDimension SetEnergy SetIdx SetMCMol SetPerceived SetRxn SetTitle SetTorsion Sweep Transform UnCompress operator C * operator bool operator= OEChem::OEConfTestBase CombineMols CompareMols CreateCopy OEChem::OECoordArray Constructors operator double * operator= OEChem::OECopyHistory OEChem::OECopyPDBData OEChem::OECopySDData OEChem::OECorrectAcidProtonGeometry OEChem::OECount OEChem::OECreateAbsSmiString OEChem::OECreateCanSmiString OEChem::OECreateIsoSmiString OEChem::OECreateSlnString OEChem::OECreateSmiString OEChem::OEDefaultConfTest CombineMols CompareMols CreateCopy OEChem::OEDefaultImplicitHCount OEChem::OEDefaultMDLHCount OEChem::OEDeleteEverythingExceptTheFirstLargestComponent OEChem::OEDeletePDBData OEChem::OEDeleteSDData OEChem::OEDetermineAromaticRingSystems OEChem::OEDetermineComponents OEChem::OEDetermineConnectivity OEChem::OEDetermineReactants OEChem::OEDetermineRingSystems OEChem::OEDisassembleExpressions OEChem::OEDoubleBondCount OEChem::OEDoubleBondOCount OEChem::OEElementHistogram OEChem::OEElemNo OEChem::OEElemNo::Ac OEChem::OEElemNo::Ag OEChem::OEElemNo::Al OEChem::OEElemNo::Am OEChem::OEElemNo::Ar OEChem::OEElemNo::As OEChem::OEElemNo::At OEChem::OEElemNo::Au OEChem::OEElemNo::B OEChem::OEElemNo::Ba OEChem::OEElemNo::Be OEChem::OEElemNo::Bh OEChem::OEElemNo::Bi OEChem::OEElemNo::Bk OEChem::OEElemNo::Br OEChem::OEElemNo::C OEChem::OEElemNo::Ca OEChem::OEElemNo::Cd OEChem::OEElemNo::Ce OEChem::OEElemNo::Cf OEChem::OEElemNo::Cl OEChem::OEElemNo::Cm OEChem::OEElemNo::Co OEChem::OEElemNo::Cr OEChem::OEElemNo::Cs OEChem::OEElemNo::Cu OEChem::OEElemNo::D OEChem::OEElemNo::Db OEChem::OEElemNo::Ds OEChem::OEElemNo::Du OEChem::OEElemNo::Dy OEChem::OEElemNo::Er OEChem::OEElemNo::Es OEChem::OEElemNo::Eu OEChem::OEElemNo::F OEChem::OEElemNo::Fe OEChem::OEElemNo::Fm OEChem::OEElemNo::Fr OEChem::OEElemNo::Ga OEChem::OEElemNo::Gd OEChem::OEElemNo::Ge OEChem::OEElemNo::H OEChem::OEElemNo::He OEChem::OEElemNo::Hf OEChem::OEElemNo::Hg OEChem::OEElemNo::Ho OEChem::OEElemNo::Hs OEChem::OEElemNo::I OEChem::OEElemNo::In OEChem::OEElemNo::Ir OEChem::OEElemNo::K OEChem::OEElemNo::Kr OEChem::OEElemNo::La OEChem::OEElemNo::Li OEChem::OEElemNo::Lp OEChem::OEElemNo::Lr OEChem::OEElemNo::Lu OEChem::OEElemNo::MAXELEM OEChem::OEElemNo::Md OEChem::OEElemNo::Mg OEChem::OEElemNo::Mn OEChem::OEElemNo::Mo OEChem::OEElemNo::Mt OEChem::OEElemNo::N OEChem::OEElemNo::Na OEChem::OEElemNo::Nb OEChem::OEElemNo::Nd OEChem::OEElemNo::Ne OEChem::OEElemNo::Ni OEChem::OEElemNo::No OEChem::OEElemNo::Np OEChem::OEElemNo::O OEChem::OEElemNo::Os OEChem::OEElemNo::P OEChem::OEElemNo::Pa OEChem::OEElemNo::Pb OEChem::OEElemNo::Pd OEChem::OEElemNo::Pm OEChem::OEElemNo::Po OEChem::OEElemNo::Pr OEChem::OEElemNo::Pt OEChem::OEElemNo::Pu OEChem::OEElemNo::Ra OEChem::OEElemNo::Rb OEChem::OEElemNo::Re OEChem::OEElemNo::Rf OEChem::OEElemNo::Rg OEChem::OEElemNo::Rh OEChem::OEElemNo::Rn OEChem::OEElemNo::Ru OEChem::OEElemNo::S OEChem::OEElemNo::Sb OEChem::OEElemNo::Sc OEChem::OEElemNo::Se OEChem::OEElemNo::Sg OEChem::OEElemNo::Si OEChem::OEElemNo::Sm OEChem::OEElemNo::Sn OEChem::OEElemNo::Sr OEChem::OEElemNo::T OEChem::OEElemNo::Ta OEChem::OEElemNo::Tb OEChem::OEElemNo::Tc OEChem::OEElemNo::Te OEChem::OEElemNo::Th OEChem::OEElemNo::Ti OEChem::OEElemNo::Tl OEChem::OEElemNo::Tm OEChem::OEElemNo::U OEChem::OEElemNo::V OEChem::OEElemNo::W OEChem::OEElemNo::Xe OEChem::OEElemNo::Xx OEChem::OEElemNo::Y OEChem::OEElemNo::Yb OEChem::OEElemNo::Zn OEChem::OEElemNo::Zr OEChem::OEEulerRotate OEChem::OEExactGraphMatch OEChem::OEExpandSuperAtoms OEChem::OEExprBase Constructors CreateCopy GetType IsEquivalent OEChem::OEExprOpts OEChem::OEExprOpts::Aromaticity OEChem::OEExprOpts::AtomicNumber OEChem::OEExprOpts::AutomorphAtoms OEChem::OEExprOpts::AutomorphBonds OEChem::OEExprOpts::BondOrder OEChem::OEExprOpts::Chiral OEChem::OEExprOpts::DefaultAtoms OEChem::OEExprOpts::DefaultBonds OEChem::OEExprOpts::Degree OEChem::OEExprOpts::EqAromatic OEChem::OEExprOpts::EqCAliphaticONS OEChem::OEExprOpts::EqCHalogen OEChem::OEExprOpts::EqCPSAcidRoot OEChem::OEExprOpts::EqDoubleTriple OEChem::OEExprOpts::EqHalogen OEChem::OEExprOpts::EqKetoneSulfoneRoot OEChem::OEExprOpts::EqMetal OEChem::OEExprOpts::EqNotAromatic OEChem::OEExprOpts::EqON OEChem::OEExprOpts::EqONS OEChem::OEExprOpts::EqPS OEChem::OEExprOpts::EqSingleDouble OEChem::OEExprOpts::ExactAtoms OEChem::OEExprOpts::ExactBonds OEChem::OEExprOpts::ExplicitDegree OEChem::OEExprOpts::FormalCharge OEChem::OEExprOpts::HCount OEChem::OEExprOpts::HvyDegree OEChem::OEExprOpts::Hybridization OEChem::OEExprOpts::ImplicitHCount OEChem::OEExprOpts::IntType OEChem::OEExprOpts::Mass OEChem::OEExprOpts::RingMember OEChem::OEExprOpts::StrictFormalCharge OEChem::OEExprOpts::StringType OEChem::OEExprOpts::SymmetryClass OEChem::OEExprOpts::Valence OEChem::OEFindRingAtomsAndBonds OEChem::OEFormalPartialCharges OEChem::OEFormat OEChem::OEFormat::BIN OEChem::OEFormat::CAN OEChem::OEFormat::CDX OEChem::OEFormat::FASTA OEChem::OEFormat::ISM OEChem::OEFormat::MAXFORMAT OEChem::OEFormat::MDL OEChem::OEFormat::MF OEChem::OEFormat::MMOD OEChem::OEFormat::MOL2 OEChem::OEFormat::MOL2H OEChem::OEFormat::MOPAC OEChem::OEFormat::OEB OEChem::OEFormat::PDB OEChem::OEFormat::RDF OEChem::OEFormat::SDF OEChem::OEFormat::SKC OEChem::OEFormat::SLN OEChem::OEFormat::SMI OEChem::OEFormat::TDT OEChem::OEFormat::UNDEFINED OEChem::OEFormat::XYZ OEChem::OEFuzzVal OEChem::OEFuzzVal::False OEChem::OEFuzzVal::Maybe OEChem::OEFuzzVal::True OEChem::OEFuzzy Constructors operator bool operator! operator!= operator&& operator== operator|| OEChem::OEGasteigerInitialCharges OEChem::OEGasteigerPartialCharges OEChem::OEGetAbsTorsion OEChem::OEGetAminoAcidCode OEChem::OEGetAngle OEChem::OEGetAnisou OEChem::OEGetAromatic OEChem::OEGetAtomComment OEChem::OEGetAtomicNum OEChem::OEGetAtomicSymbol OEChem::OEGetAutomorphs OEChem::OEGetAverageWeight OEChem::OEGetBondiVdWRadius OEChem::OEGetBondOrder OEChem::OEGetCenterAndExtents OEChem::OEGetCenterOfMass OEChem::OEGetComment OEChem::OEGetCovalentRadius OEChem::OEGetDefaultMass OEChem::OEGetDelphiRadius OEChem::OEGetDistance OEChem::OEGetDistance2 OEChem::OEGetDoubleBondNeighbor OEChem::OEGetFileExtension OEChem::OEGetFileType OEChem::OEGetFormalCharge OEChem::OEGetFormatExtension OEChem::OEGetFormatString OEChem::OEGetHCount OEChem::OEGetHonigIonicCavityRadius OEChem::OEGetHybridization OEChem::OEGetImplicitHCount OEChem::OEGetIsotopicWeight OEChem::OEGetNbrAtom Constructors CreateCopy operator delete operator new operator() OEChem::OEGetNearestNbrs OEChem::OEGetOtherNeighbor OEChem::OEGetPackedCoords OEChem::OEGetPathLength OEChem::OEGetPaulingVdWRadius OEChem::OEGetPDBAtomIndex OEChem::OEGetPDBAtomName OEChem::OEGetPDBBaseData OEChem::OEGetPDBData OEChem::OEGetPDBDataPairs OEChem::OEGetResidueIndex OEChem::OEGetResidueName OEChem::OEGetSDBaseData OEChem::OEGetSDData OEChem::OEGetSDDataPairs OEChem::OEGetSingleBondNeighbor OEChem::OEGetSmallestSubtree OEChem::OEGetSoleBond OEChem::OEGetSoleDoubleBond OEChem::OEGetSoleNeighbor OEChem::OEGetSoleSingleBond OEChem::OEGetSoleTripleBond OEChem::OEGetStereo OEChem::OEGetSubtree OEChem::OEGetTokenizer OEChem::OEGetTorsion OEChem::OEGetTorsions OEChem::OEGetTripleBondNeighbor OEChem::OEGetUniMolecularRxnIter OEChem::OEGraphMol AddData Clear Compress Constructors Count CreateCopy DeleteAtom DeleteBond DeleteData GetAtom GetAtoms GetBond GetBonds GetBoolData GetCoords GetData GetDataIter GetDataType GetDimension GetDoubleData GetEnergy GetFloatData GetIntData GetMaxAtomIdx GetMaxBondIdx GetStringData GetTitle HasData HasPerceived IsDataType IsDeleted IsRxn NewAtom NewBond NumAtoms NumBonds OrderAtoms OrderBonds ResetPerceived SCMol SetBoolData SetCoords SetData SetDimension SetDoubleData SetEnergy SetFloatData SetIntData SetPerceived SetRxn SetStringData SetTitle Sweep UnCompress operator OEMolBase & operator bool operator= OEChem::OEHasAtomicNum Constructors CreateCopy operator() OEChem::OEHasAtomName Constructors CreateCopy operator() OEChem::OEHasAtomStereoHydrogens OEChem::OEHasAtomStereoSpecified Constructors CreateCopy operator() OEChem::OEHasBondStereoHydrogens OEChem::OEHasBondStereoSpecified Constructors CreateCopy operator() OEChem::OEHasChainID Constructors CreateCopy operator() OEChem::OEHasDoubleBond OEChem::OEHasDoubleBondO OEChem::OEHasExplicitHydrogens OEChem::OEHasFragmentNumber Constructors CreateCopy operator() OEChem::OEHasIdx Constructors CreateCopy operator() OEChem::OEHasImplicitHydrogens OEChem::OEHasMapIdx Constructors CreateCopy operator() OEChem::OEHasMultipleBond OEChem::OEHasOrder Constructors CreateCopy operator() OEChem::OEHasPartialCharges OEChem::OEHasPDBData OEChem::OEHasResidue OEChem::OEHasResidueNumber Constructors CreateCopy operator() OEChem::OEHasResidues OEChem::OEHasSDData OEChem::OEHasSingleBond OEChem::OEHasStereoHydrogens OEChem::OEHasTokenizer OEChem::OEHasTripleBond OEChem::OEHistogramFormula OEChem::OEHybridization OEChem::OEHybridization::sp OEChem::OEHybridization::sp2 OEChem::OEHybridization::sp3 OEChem::OEHybridization::sp3d OEChem::OEHybridization::sp3d2 OEChem::OEHybridization::Unknown OEChem::OEIFlavor OEChem::OEIFlavor::BIN OEChem::OEIFlavor::BIN::Default OEChem::OEIFlavor::CAN OEChem::OEIFlavor::CAN::Default OEChem::OEIFlavor::CDX OEChem::OEIFlavor::CDX::Default OEChem::OEIFlavor::FASTA OEChem::OEIFlavor::FASTA::Default OEChem::OEIFlavor::Generic OEChem::OEIFlavor::Generic::AroMask OEChem::OEIFlavor::Generic::Default OEChem::OEIFlavor::Generic::DEFAULT OEChem::OEIFlavor::Generic::GenericMask OEChem::OEIFlavor::Generic::OEAroModelDaylight OEChem::OEIFlavor::Generic::OEAroModelMDL OEChem::OEIFlavor::Generic::OEAroModelMMFF OEChem::OEIFlavor::Generic::OEAroModelOpenEye OEChem::OEIFlavor::Generic::OEAroModelTripos OEChem::OEIFlavor::Generic::Rings OEChem::OEIFlavor::Generic::SpecificMask OEChem::OEIFlavor::ISM OEChem::OEIFlavor::ISM::Default OEChem::OEIFlavor::MDL OEChem::OEIFlavor::MDL::Default OEChem::OEIFlavor::MF OEChem::OEIFlavor::MF::Default OEChem::OEIFlavor::MMOD OEChem::OEIFlavor::MMOD::Default OEChem::OEIFlavor::MMOD::FormalCrg OEChem::OEIFlavor::MOL2 OEChem::OEIFlavor::MOL2::AllMask OEChem::OEIFlavor::MOL2::DEFAULT OEChem::OEIFlavor::MOL2::Default OEChem::OEIFlavor::MOL2::M2H OEChem::OEIFlavor::MOL2H OEChem::OEIFlavor::MOL2H::AllMask OEChem::OEIFlavor::MOL2H::Default OEChem::OEIFlavor::MOL2H::DEFAULT OEChem::OEIFlavor::MOL2H::M2H OEChem::OEIFlavor::MOPAC OEChem::OEIFlavor::MOPAC::Default OEChem::OEIFlavor::OEB OEChem::OEIFlavor::OEB::Default OEChem::OEIFlavor::PDB OEChem::OEIFlavor::PDB::ALL OEChem::OEIFlavor::PDB::AllMask OEChem::OEIFlavor::PDB::BasicMask OEChem::OEIFlavor::PDB::BondOrder OEChem::OEIFlavor::PDB::CHARGE OEChem::OEIFlavor::PDB::Connect OEChem::OEIFlavor::PDB::DATA OEChem::OEIFlavor::PDB::Default OEChem::OEIFlavor::PDB::DEFAULT OEChem::OEIFlavor::PDB::DELPHI OEChem::OEIFlavor::PDB::END OEChem::OEIFlavor::PDB::ENDM OEChem::OEIFlavor::PDB::ExtraMask OEChem::OEIFlavor::PDB::FormalCrg OEChem::OEIFlavor::PDB::ImplicitH OEChem::OEIFlavor::PDB::RADIUS OEChem::OEIFlavor::PDB::Rings OEChem::OEIFlavor::PDB::TER OEChem::OEIFlavor::PDB::TerMask OEChem::OEIFlavor::RDF OEChem::OEIFlavor::RDF::Default OEChem::OEIFlavor::SDF OEChem::OEIFlavor::SDF::Default OEChem::OEIFlavor::SKC OEChem::OEIFlavor::SKC::Default OEChem::OEIFlavor::SLN OEChem::OEIFlavor::SLN::Default OEChem::OEIFlavor::SMI OEChem::OEIFlavor::SMI::Canon OEChem::OEIFlavor::SMI::Default OEChem::OEIFlavor::SMI::DEFAULT OEChem::OEIFlavor::SMI::Strict OEChem::OEIFlavor::TDT OEChem::OEIFlavor::TDT::Default OEChem::OEIFlavor::XYZ OEChem::OEIFlavor::XYZ::BondOrder OEChem::OEIFlavor::XYZ::Connect OEChem::OEIFlavor::XYZ::Default OEChem::OEIFlavor::XYZ::ExtraMask OEChem::OEIFlavor::XYZ::FormalCrg OEChem::OEIFlavor::XYZ::ImplicitH OEChem::OEIFlavor::XYZ::Rings OEChem::OEInitDefaultHandler OEChem::OEInitHandler OEChem::OEInSamePart Constructors CreateCopy operator() operator= OEChem::OEInvertCenter OEChem::OEIsAromaticAtom CreateCopy operator() OEChem::OEIsAromaticBond CreateCopy operator() OEChem::OEIsBinary OEChem::OEIsCAlpha CreateCopy operator() OEChem::OEIsCarbon CreateCopy operator() OEChem::OEIsChiralAtom CreateCopy operator() OEChem::OEIsChiralBond CreateCopy operator() OEChem::OEIsCommonIsotope OEChem::OEIsExtension OEChem::OEIsGZip OEChem::OEIsHalide CreateCopy operator() OEChem::OEIsHalogen CreateCopy operator() OEChem::OEIsHeavy CreateCopy operator() OEChem::OEIsHydrogen CreateCopy operator() OEChem::OEIsMember Constructors CreateCopy Set operator() operator= OEChem::OEIsMemberPtr Constructors CreateCopy Set operator() operator= OEChem::OEIsNitrogen CreateCopy operator() OEChem::OEIsomericConfTest CombineMols CompareMols Constructors CreateCopy OEChem::OEIsOxygen CreateCopy operator() OEChem::OEIsPhosphorus CreateCopy operator() OEChem::OEIsPolar CreateCopy operator() OEChem::OEIsPolarHydrogen CreateCopy operator() OEChem::OEIsReadable OEChem::OEIsRGroup Constructors CreateCopy operator() OEChem::OEIsRotor Constructors CreateCopy operator() OEChem::OEIsSingleOrAromatic OEChem::OEIsSulfur CreateCopy operator() OEChem::OEIsTerminalOxygen OEChem::OEIsTerminalSulfur OEChem::OEIsWriteable OEChem::OEKekulize OEChem::OELibraryGen AddStartingMaterial ClearStartingMaterial Constructors GetAssignMapIdx GetExplicitHydrogens GetProducts GetRemoveUnmappedFragments GetStartingMaterial GetTitleSeparator GetValenceCorrection Init NumReactants SetAssignMapIdx SetExplicitHydrogens SetRemoveUnmappedFragments SetStartingMaterial SetTitleSeparator SetValenceCorrection operator bool operator() operator= OEChem::OELingoSim Constructors GetType Init IsValid SetImpl Similarity operator= OEChem::OEMacroModelAtomTypeNames OEChem::OEMacroModelAtomTypes OEChem::OEMacroModelTypeElement OEChem::OEMacroModelTypeName OEChem::OEMacroModelTypeNames OEChem::OEMatch AddPair Clear Constructors CreateCopy GetAtoms GetBonds NumAtoms NumBonds operator= OEChem::OEMatchBase Clear CreateCopy GetAtoms GetBonds GetPatternAtoms GetPatternBonds GetTargetAtoms GetTargetBonds NumAtoms NumBonds OEChem::OEMatchFunc Constructors CreateCopy operator bool operator() OEChem::OEMatchPair Constructors operator= OEChem::OEMCMolBaseT Clear ClearBase ClearMCMol ClearMolBase Compress Count CreateCopy DeleteAtom DeleteBond DeleteConf DeleteConfs GetActive GetAtom GetAtoms GetBond GetBonds GetConf GetConfs GetCoords GetDataType GetDimension GetEnergy GetMaxAtomIdx GetMaxBondIdx GetMaxConfIdx GetTitle HasPerceived IsDataType IsDeleted NewAtom NewBond NewConf NumAtoms NumBonds NumConfs OrderAtoms OrderBonds OrderConfs PopActive PushActive ResetConf ResetPerceived SetActive SetCoords SetDimension SetEnergy SetPerceived SetTitle Sweep SweepConfs UnCompress operator bool operator= OEChem::OEMCMolType OEChem::OEMCMolType::Cartesian OEChem::OEMCMolType::MaxType OEChem::OEMCMolType::OEDBMCMol OEChem::OEMCMolType::OEDefault OEChem::OEMCMolType::Rotation OEChem::OEMCMolType::Torsion OEChem::OEMCMolType::Undefined OEChem::OEMCSFunc CreateCopy operator() OEChem::OEMCSMaxAtoms CreateCopy operator() OEChem::OEMCSMaxAtomsCompleteCycles Constructors CreateCopy operator() OEChem::OEMCSMaxBonds CreateCopy operator() OEChem::OEMCSMaxBondsCompleteCycles Constructors CreateCopy operator() OEChem::OEMCSSearch AddConstraint ClearConstraints Constructors GetMaxMatches GetMinAtoms GetPattern GetSaveRange Init Match SetMCSFunc SetMaxMatches SetMinAtoms SetSaveRange SingleMatch operator bool operator= OEChem::OEMCSType OEChem::OEMCSType::Approximate OEChem::OEMCSType::Default OEChem::OEMCSType::Exhaustive OEChem::OEMDLClearParity OEChem::OEMDLCorrectBondStereo OEChem::OEMDLHasIncorrectBondStereo OEChem::OEMDLHasParity OEChem::OEMDLParityTag OEChem::OEMDLPerceiveBondStereo OEChem::OEMDLPerceiveParity OEChem::OEMDLQueryOpts OEChem::OEMDLQueryOpts::AddBondAliphaticConstraint OEChem::OEMDLQueryOpts::AddBondTopologyConstraint OEChem::OEMDLQueryOpts::Default OEChem::OEMDLQueryOpts::ReactionQuery OEChem::OEMDLQueryOpts::SuppressExplicitH OEChem::OEMDLStereoFromBondStereo OEChem::OEMDLStereoFromParity OEChem::OEMMFF94InitialCharges OEChem::OEMMFF94PartialCharges OEChem::OEMMFFAtomType OEChem::OEMMFFAtomTypeNames OEChem::OEMMFFAtomTypes OEChem::OEMMFFClearRemappedElements OEChem::OEMMFFRemapElement OEChem::OEMMFFTypeIndex OEChem::OEMMFFTypeName OEChem::OEMMFFTypeNames OEChem::OEMModType OEChem::OEMModType::B2 OEChem::OEMModType::B3 OEChem::OEMModType::Ba OEChem::OEMModType::Br OEChem::OEMModType::C0 OEChem::OEMModType::C1 OEChem::OEMModType::c1 OEChem::OEMModType::C2 OEChem::OEMModType::c2 OEChem::OEMModType::C3 OEChem::OEMModType::CA OEChem::OEMModType::Ca OEChem::OEMModType::CB OEChem::OEMModType::CC OEChem::OEMModType::CD OEChem::OEMModType::CE OEChem::OEMModType::CF OEChem::OEMModType::Cl OEChem::OEMModType::CM OEChem::OEMModType::Cm OEChem::OEMModType::CP OEChem::OEMModType::CR OEChem::OEMModType::Cs OEChem::OEMModType::Du OEChem::OEMModType::F0 OEChem::OEMModType::f2 OEChem::OEMModType::f3 OEChem::OEMModType::H0 OEChem::OEMModType::H1 OEChem::OEMModType::H2 OEChem::OEMModType::H3 OEChem::OEMModType::H4 OEChem::OEMModType::H5 OEChem::OEMModType::I0 OEChem::OEMModType::K0 OEChem::OEMModType::Li OEChem::OEMModType::Lp OEChem::OEMModType::M2 OEChem::OEMModType::M3 OEChem::OEMModType::m3 OEChem::OEMModType::M4 OEChem::OEMModType::m4 OEChem::OEMModType::m5 OEChem::OEMModType::M5 OEChem::OEMModType::m6 OEChem::OEMModType::M6 OEChem::OEMModType::M7 OEChem::OEMModType::MAXTYPE OEChem::OEMModType::Mg OEChem::OEMModType::N0 OEChem::OEMModType::N1 OEChem::OEMModType::n2 OEChem::OEMModType::N2 OEChem::OEMModType::N3 OEChem::OEMModType::n3 OEChem::OEMModType::N4 OEChem::OEMModType::N5 OEChem::OEMModType::NA OEChem::OEMModType::Na OEChem::OEMModType::NB OEChem::OEMModType::NC OEChem::OEMModType::ND OEChem::OEMModType::NE OEChem::OEMModType::NF OEChem::OEMModType::NG OEChem::OEMModType::NH OEChem::OEMModType::NI OEChem::OEMModType::NM OEChem::OEMModType::NP OEChem::OEMModType::O0 OEChem::OEMModType::o2 OEChem::OEMModType::O2 OEChem::OEMModType::o3 OEChem::OEMModType::O3 OEChem::OEMModType::OA OEChem::OEMModType::OM OEChem::OEMModType::OP OEChem::OEMModType::OQ OEChem::OEMModType::OW OEChem::OEMModType::P0 OEChem::OEMModType::Rb OEChem::OEMModType::S0 OEChem::OEMModType::S1 OEChem::OEMModType::S2 OEChem::OEMModType::SA OEChem::OEMModType::Si OEChem::OEMModType::SM OEChem::OEMModType::SP OEChem::OEMModType::Z0 OEChem::OEMModType::Zn OEChem::OEMol AddData Clear ClearBase ClearMCMol ClearMolBase Compress Constructors Count CreateCopy DeleteAtom DeleteBond DeleteConf DeleteConfs DeleteData GetActive GetAtom GetAtoms GetBond GetBonds GetBoolData GetConf GetConfs GetCoords GetData GetDataIter GetDataType GetDimension GetDoubleData GetEnergy GetFloatData GetIntData GetMaxAtomIdx GetMaxBondIdx GetMaxConfIdx GetStringData GetTitle HasData HasPerceived IsDataType IsDeleted IsRxn MCMol NewAtom NewBond NewConf NumAtoms NumBonds NumConfs OrderAtoms OrderBonds OrderConfs PopActive PushActive ResetConf ResetPerceived SCMol SetActive SetBoolData SetCoords SetData SetDimension SetDoubleData SetEnergy SetFloatData SetIntData SetPerceived SetRxn SetStringData SetTitle Sweep SweepConfs UnCompress operator OEMCMolBase & operator bool operator= OEChem::OEMolBase Clear Compress Count CreateCopy DeleteAtom DeleteBond GetAtom GetAtoms GetBond GetBonds GetCoords GetDimension GetEnergy GetMaxAtomIdx GetMaxBondIdx GetTitle HasPerceived IsDataType IsDeleted IsRxn NewAtom NewBond NumAtoms NumBonds OrderAtoms OrderBonds ResetPerceived SetCoords SetDimension SetEnergy SetPerceived SetRxn SetTitle Sweep UnCompress operator bool operator= OEChem::OEMolBaseType OEChem::OEMolBaseType::MaxType OEChem::OEMolBaseType::OEDBMol OEChem::OEMolBaseType::OEDefault OEChem::OEMolBaseType::OEMiniMol OEChem::OEMolBaseType::Undefined OEChem::OEMolecularFormula OEChem::oemolistream Constructors GetConfTest GetMCMolBases GetMolBases GetNextMol GetReadFailureCt HasNextMol IncrementReadFailureCt PeekNextMol PushNextMol ResetReadFailureCt SetConfTest SetFlavor SetFormat SetTracer Setgz close eof getbyte getline openstring operator OEPlatform::oeistream & operator bool peekbyte pushline read rewind seek size skip skipbyte skipline tell OEChem::oemolithread Constructors GetIStream GetMolStream SetFlavor SetFormat close openstring OEChem::oemolostream Constructors GetString SetFlavor SetFormat SetString Setgz close flush openstring operator OEPlatform::oeostream & operator bool put seekp tell write OEChem::oemolothread Constructors GetMolStream GetOStream GetString SetFlavor SetFormat close openstring OEChem::oemolstreambase GetBinaryIOHandler GetFlavor GetFormat Getgz SetFlavor SetFormat close open OEChem::oemolthreadbase GetMol PutMol operator bool OEChem::OEMOPACOFlag OEChem::OEMOPACOFlag::CHARGES OEChem::OEMOPACOFlag::DEFAULT OEChem::OEMOPACOFlag::XYZ OEChem::OEMultipleBondCount OEChem::OENbrs Constructors GetBgn GetDist2 GetEnd OEChem::OENearestNbrs Constructors GetNbrs OEChem::OENearestNbrsMethod OEChem::OENearestNbrsMethod::AllByAll OEChem::OENearestNbrsMethod::Auto OEChem::OENearestNbrsMethod::Default OEChem::OENearestNbrsMethod::LocalHash OEChem::OENearestNbrsMethod::ZCoordSort OEChem::OENetCharge OEChem::OENewMCMolBase OEChem::OENewMolBase OEChem::OENewQMolBase OEChem::OENormalize OEChem::OENthAtom Constructors CreateCopy operator() OEChem::OEOFlavor OEChem::OEOFlavor::BIN OEChem::OEOFlavor::BIN::Default OEChem::OEOFlavor::CAN OEChem::OEOFlavor::CAN::AtomMaps OEChem::OEOFlavor::CAN::AtomStereo OEChem::OEOFlavor::CAN::BondStereo OEChem::OEOFlavor::CAN::Canonical OEChem::OEOFlavor::CAN::Default OEChem::OEOFlavor::CAN::DEFAULT OEChem::OEOFlavor::CAN::ExtBonds OEChem::OEOFlavor::CAN::Hydrogens OEChem::OEOFlavor::CAN::ImpHCount OEChem::OEOFlavor::CAN::Isotopes OEChem::OEOFlavor::CAN::Kekule OEChem::OEOFlavor::CAN::RGroups OEChem::OEOFlavor::CAN::SmiMask OEChem::OEOFlavor::CAN::SuperAtoms OEChem::OEOFlavor::CDX OEChem::OEOFlavor::CDX::Default OEChem::OEOFlavor::FASTA OEChem::OEOFlavor::FASTA::Default OEChem::OEOFlavor::Generic OEChem::OEOFlavor::Generic::AroMask OEChem::OEOFlavor::Generic::Default OEChem::OEOFlavor::Generic::DEFAULT OEChem::OEOFlavor::Generic::GenericMask OEChem::OEOFlavor::Generic::OEAroModelDaylight OEChem::OEOFlavor::Generic::OEAroModelMDL OEChem::OEOFlavor::Generic::OEAroModelMMFF OEChem::OEOFlavor::Generic::OEAroModelOpenEye OEChem::OEOFlavor::Generic::OEAroModelTripos OEChem::OEOFlavor::Generic::Rings OEChem::OEOFlavor::Generic::SpecificMask OEChem::OEOFlavor::ISM OEChem::OEOFlavor::ISM::AtomMaps OEChem::OEOFlavor::ISM::AtomStereo OEChem::OEOFlavor::ISM::BondStereo OEChem::OEOFlavor::ISM::Canonical OEChem::OEOFlavor::ISM::Default OEChem::OEOFlavor::ISM::DEFAULT OEChem::OEOFlavor::ISM::ExtBonds OEChem::OEOFlavor::ISM::Hydrogens OEChem::OEOFlavor::ISM::ImpHCount OEChem::OEOFlavor::ISM::Isotopes OEChem::OEOFlavor::ISM::Kekule OEChem::OEOFlavor::ISM::RGroups OEChem::OEOFlavor::ISM::SmiMask OEChem::OEOFlavor::ISM::SuperAtoms OEChem::OEOFlavor::MDL OEChem::OEOFlavor::MDL::CurrentParity OEChem::OEOFlavor::MDL::DEFAULT OEChem::OEOFlavor::MDL::Default OEChem::OEOFlavor::MDL::MCHG OEChem::OEOFlavor::MDL::MDLParity OEChem::OEOFlavor::MDL::MISO OEChem::OEOFlavor::MDL::MMask OEChem::OEOFlavor::MDL::MRGP OEChem::OEOFlavor::MDL::MV30 OEChem::OEOFlavor::MDL::NoParity OEChem::OEOFlavor::MDL::PMask OEChem::OEOFlavor::MF OEChem::OEOFlavor::MF::Default OEChem::OEOFlavor::MF::DEFAULT OEChem::OEOFlavor::MF::Title OEChem::OEOFlavor::MMOD OEChem::OEOFlavor::MMOD::AtomTypes OEChem::OEOFlavor::MMOD::Default OEChem::OEOFlavor::MMOD::DEFAULT OEChem::OEOFlavor::MOL2 OEChem::OEOFlavor::MOL2::AllMask OEChem::OEOFlavor::MOL2::AtomNames OEChem::OEOFlavor::MOL2::AtomTypeNames OEChem::OEOFlavor::MOL2::BondTypeNames OEChem::OEOFlavor::MOL2::Default OEChem::OEOFlavor::MOL2::DEFAULT OEChem::OEOFlavor::MOL2::Hydrogens OEChem::OEOFlavor::MOL2::NameMask OEChem::OEOFlavor::MOL2::OrderAtoms OEChem::OEOFlavor::MOL2::Substructure OEChem::OEOFlavor::MOL2H OEChem::OEOFlavor::MOL2H::AllMask OEChem::OEOFlavor::MOL2H::AtomNames OEChem::OEOFlavor::MOL2H::AtomTypeNames OEChem::OEOFlavor::MOL2H::BondTypeNames OEChem::OEOFlavor::MOL2H::Default OEChem::OEOFlavor::MOL2H::DEFAULT OEChem::OEOFlavor::MOL2H::Hydrogens OEChem::OEOFlavor::MOL2H::NameMask OEChem::OEOFlavor::MOL2H::OrderAtoms OEChem::OEOFlavor::MOL2H::Substructure OEChem::OEOFlavor::MOPAC OEChem::OEOFlavor::MOPAC::AllMask OEChem::OEOFlavor::MOPAC::CHARGES OEChem::OEOFlavor::MOPAC::DEFAULT OEChem::OEOFlavor::MOPAC::Default OEChem::OEOFlavor::MOPAC::XYZ OEChem::OEOFlavor::OEB OEChem::OEOFlavor::OEB::Default OEChem::OEOFlavor::PDB OEChem::OEOFlavor::PDB::AllMask OEChem::OEOFlavor::PDB::BasicMask OEChem::OEOFlavor::PDB::BONDS OEChem::OEOFlavor::PDB::BOTH OEChem::OEOFlavor::PDB::CHARGE OEChem::OEOFlavor::PDB::CurrentResidues OEChem::OEOFlavor::PDB::Default OEChem::OEOFlavor::PDB::DEFAULT OEChem::OEOFlavor::PDB::DELPHI OEChem::OEOFlavor::PDB::ELEMENT OEChem::OEOFlavor::PDB::FormalCrg OEChem::OEOFlavor::PDB::HETBONDS OEChem::OEOFlavor::PDB::NoResidues OEChem::OEOFlavor::PDB::OEResidues OEChem::OEOFlavor::PDB::OrderAtoms OEChem::OEOFlavor::PDB::ORDERS OEChem::OEOFlavor::PDB::RADIUS OEChem::OEOFlavor::PDB::TER OEChem::OEOFlavor::RDF OEChem::OEOFlavor::RDF::CurrentParity OEChem::OEOFlavor::RDF::DEFAULT OEChem::OEOFlavor::RDF::Default OEChem::OEOFlavor::RDF::MCHG OEChem::OEOFlavor::RDF::MDLParity OEChem::OEOFlavor::RDF::MISO OEChem::OEOFlavor::RDF::MMask OEChem::OEOFlavor::RDF::MRGP OEChem::OEOFlavor::RDF::MV30 OEChem::OEOFlavor::RDF::NoParity OEChem::OEOFlavor::RDF::PMask OEChem::OEOFlavor::SDF OEChem::OEOFlavor::SDF::CurrentParity OEChem::OEOFlavor::SDF::DEFAULT OEChem::OEOFlavor::SDF::Default OEChem::OEOFlavor::SDF::MCHG OEChem::OEOFlavor::SDF::MDLParity OEChem::OEOFlavor::SDF::MISO OEChem::OEOFlavor::SDF::MMask OEChem::OEOFlavor::SDF::MRGP OEChem::OEOFlavor::SDF::MV30 OEChem::OEOFlavor::SDF::NoParity OEChem::OEOFlavor::SDF::PMask OEChem::OEOFlavor::SKC OEChem::OEOFlavor::SKC::Default OEChem::OEOFlavor::SLN OEChem::OEOFlavor::SLN::Default OEChem::OEOFlavor::SMI OEChem::OEOFlavor::SMI::AtomMaps OEChem::OEOFlavor::SMI::AtomStereo OEChem::OEOFlavor::SMI::BondStereo OEChem::OEOFlavor::SMI::Canonical OEChem::OEOFlavor::SMI::Default OEChem::OEOFlavor::SMI::DEFAULT OEChem::OEOFlavor::SMI::ExtBonds OEChem::OEOFlavor::SMI::Hydrogens OEChem::OEOFlavor::SMI::ImpHCount OEChem::OEOFlavor::SMI::Isotopes OEChem::OEOFlavor::SMI::Kekule OEChem::OEOFlavor::SMI::RGroups OEChem::OEOFlavor::SMI::SmiMask OEChem::OEOFlavor::SMI::SuperAtoms OEChem::OEOFlavor::TDT OEChem::OEOFlavor::TDT::Default OEChem::OEOFlavor::XYZ OEChem::OEOFlavor::XYZ::Charges OEChem::OEOFlavor::XYZ::Default OEChem::OEOFlavor::XYZ::Symbols OEChem::OEParseSmarts OEChem::OEParseSmiles OEChem::OEParseSmirks OEChem::OEPartPredT Constructors CreateCopy SelectPart operator() operator= OEChem::OEPDBAtomName OEChem::OEPDBAtomName::C OEChem::OEPDBAtomName::C10 OEChem::OEPDBAtomName::C11 OEChem::OEPDBAtomName::C12 OEChem::OEPDBAtomName::C13 OEChem::OEPDBAtomName::C14 OEChem::OEPDBAtomName::C15 OEChem::OEPDBAtomName::C16 OEChem::OEPDBAtomName::C19 OEChem::OEPDBAtomName::C1_ OEChem::OEPDBAtomName::C2 OEChem::OEPDBAtomName::C21 OEChem::OEPDBAtomName::C24 OEChem::OEPDBAtomName::C2_ OEChem::OEPDBAtomName::C2A OEChem::OEPDBAtomName::C3 OEChem::OEPDBAtomName::C3_ OEChem::OEPDBAtomName::C4 OEChem::OEPDBAtomName::C4_ OEChem::OEPDBAtomName::C5 OEChem::OEPDBAtomName::C5_ OEChem::OEPDBAtomName::C5M OEChem::OEPDBAtomName::C6 OEChem::OEPDBAtomName::C8 OEChem::OEPDBAtomName::CA OEChem::OEPDBAtomName::CAnext OEChem::OEPDBAtomName::CB OEChem::OEPDBAtomName::CD OEChem::OEPDBAtomName::CD1 OEChem::OEPDBAtomName::CD2 OEChem::OEPDBAtomName::CE OEChem::OEPDBAtomName::CE1 OEChem::OEPDBAtomName::CE2 OEChem::OEPDBAtomName::CE3 OEChem::OEPDBAtomName::CG OEChem::OEPDBAtomName::CG1 OEChem::OEPDBAtomName::CG2 OEChem::OEPDBAtomName::CH1 OEChem::OEPDBAtomName::CH2 OEChem::OEPDBAtomName::CH3 OEChem::OEPDBAtomName::CM1 OEChem::OEPDBAtomName::CM2 OEChem::OEPDBAtomName::CM5 OEChem::OEPDBAtomName::CM7 OEChem::OEPDBAtomName::Cprev OEChem::OEPDBAtomName::CZ OEChem::OEPDBAtomName::CZ2 OEChem::OEPDBAtomName::CZ3 OEChem::OEPDBAtomName::N OEChem::OEPDBAtomName::N1 OEChem::OEPDBAtomName::N2 OEChem::OEPDBAtomName::N20 OEChem::OEPDBAtomName::N3 OEChem::OEPDBAtomName::N4 OEChem::OEPDBAtomName::N6 OEChem::OEPDBAtomName::N7 OEChem::OEPDBAtomName::N9 OEChem::OEPDBAtomName::ND1 OEChem::OEPDBAtomName::ND2 OEChem::OEPDBAtomName::NE OEChem::OEPDBAtomName::NE1 OEChem::OEPDBAtomName::NE2 OEChem::OEPDBAtomName::NH1 OEChem::OEPDBAtomName::NH2 OEChem::OEPDBAtomName::Nnext OEChem::OEPDBAtomName::NZ OEChem::OEPDBAtomName::O OEChem::OEPDBAtomName::O17 OEChem::OEPDBAtomName::O18 OEChem::OEPDBAtomName::O1P OEChem::OEPDBAtomName::O2 OEChem::OEPDBAtomName::O22 OEChem::OEPDBAtomName::O23 OEChem::OEPDBAtomName::O2_ OEChem::OEPDBAtomName::O2P OEChem::OEPDBAtomName::O3_ OEChem::OEPDBAtomName::O3P OEChem::OEPDBAtomName::O4 OEChem::OEPDBAtomName::O4_ OEChem::OEPDBAtomName::O5_ OEChem::OEPDBAtomName::O6 OEChem::OEPDBAtomName::OD OEChem::OEPDBAtomName::OD1 OEChem::OEPDBAtomName::OD2 OEChem::OEPDBAtomName::OE OEChem::OEPDBAtomName::OE1 OEChem::OEPDBAtomName::OE2 OEChem::OEPDBAtomName::OE3 OEChem::OEPDBAtomName::OE4 OEChem::OEPDBAtomName::OG OEChem::OEPDBAtomName::OG1 OEChem::OEPDBAtomName::OH OEChem::OEPDBAtomName::OXT OEChem::OEPDBAtomName::P OEChem::OEPDBAtomName::SD OEChem::OEPDBAtomName::SE_ OEChem::OEPDBAtomName::SG OEChem::OEPDBOrderAtoms OEChem::OEPerceiveBondOrders OEChem::OEPerceiveChiral OEChem::OEPerceived OEChem::OEPerceived::Aromaticity OEChem::OEPerceived::AtomStereo OEChem::OEPerceived::BondStereo OEChem::OEPerceived::Chains OEChem::OEPerceived::Chiral OEChem::OEPerceived::Energy OEChem::OEPerceived::Hybridization OEChem::OEPerceived::PartialCharges OEChem::OEPerceived::RingAtomsAndBonds OEChem::OEPerceiveResidues OEChem::OEPerceiveSymmetry OEChem::OEPreserveResInfo OEChem::OEPreserveResInfo::All OEChem::OEPreserveResInfo::AlternateLocation OEChem::OEPreserveResInfo::AtomName

OEChem::OEPreserveResInfo::ChainID OEChem::OEPreserveResInfo::Default OEChem::OEPreserveResInfo::HetAtom OEChem::OEPreserveResInfo::InsertCode OEChem::OEPreserveResInfo::None OEChem::OEPreserveResInfo::ResidueName OEChem::OEPreserveResInfo::ResidueNumber OEChem::OEPreserveResInfo::SerialNumber OEChem::OEProperty OEChem::OEProperty::Acceptor OEChem::OEProperty::All OEChem::OEProperty::Anisou OEChem::OEProperty::Aromatic OEChem::OEProperty::AroModel OEChem::OEProperty::AtomMemberPred OEChem::OEProperty::AtomName OEChem::OEProperty::AtomTypeInt OEChem::OEProperty::AtomTypes OEChem::OEProperty::AtomTypeString OEChem::OEProperty::BondMemberPred OEChem::OEProperty::BondOrders OEChem::OEProperty::BondStereo OEChem::OEProperty::BondTypeString OEChem::OEProperty::Both OEChem::OEProperty::Chiral OEChem::OEProperty::Chirality OEChem::OEProperty::Closure OEChem::OEProperty::ClosureBonds OEChem::OEProperty::Component OEChem::OEProperty::Degree OEChem::OEProperty::Deleted OEChem::OEProperty::DeletedAtoms OEChem::OEProperty::DeletedBonds OEChem::OEProperty::Dimension OEChem::OEProperty::Donor OEChem::OEProperty::Double OEChem::OEProperty::Endo OEChem::OEProperty::Exo OEChem::OEProperty::Hybridization OEChem::OEProperty::HydrogenMode OEChem::OEProperty::Isotope OEChem::OEProperty::Kekule OEChem::OEProperty::MapIdx OEChem::OEProperty::MatchOrder OEChem::OEProperty::OEBase OEChem::OEProperty::PartialCharge OEChem::OEProperty::PartialChargeModel OEChem::OEProperty::Perceived OEChem::OEProperty::PhCorrected OEChem::OEProperty::Radius OEChem::OEProperty::Residue OEChem::OEProperty::Ring OEChem::OEProperty::RingAtomsAndBonds OEChem::OEProperty::Rotor OEChem::OEProperty::Rxn OEChem::OEProperty::RxnRole OEChem::OEProperty::Single OEChem::OEProperty::StereoDefined OEChem::OEProperty::SymClass OEChem::OEProperty::Triple OEChem::OEProperty::Undefined OEChem::OEProperty::Valence OEChem::OEProperty::Visit OEChem::OEProperty::X OEChem::OEProperty::Y OEChem::OEProperty::Z OEChem::OEQAtomBase GetParentAtom GetQAtoms GetQBonds IsDataType OEChem::OEQBase GetExpr SetExpr OEChem::OEQBondBase GetParentBond IsDataType OEChem::OEQMol AddData BuildExpressions Clear Compress Constructors Count CreateCopy DeleteAtom DeleteBond DeleteData GetAtom GetAtoms GetBond GetBonds GetBoolData GetCoords GetData GetDataIter GetDataType GetDimension GetDoubleData GetEnergy GetFloatData GetIntData GetMaxAtomIdx GetMaxBondIdx GetQAtoms GetQBonds GetStringData GetTitle HasData HasPerceived IsDataType IsDeleted IsRxn NewAtom NewBond NumAtoms NumBonds OrderAtoms OrderBonds QMol ResetPerceived SCMol SetBoolData SetCoords SetData SetDimension SetDoubleData SetEnergy SetFloatData SetIntData SetPerceived SetRxn SetStringData SetTitle Sweep UnCompress operator OEMolBase & operator OEQMolBase & operator bool operator= OEChem::OEQMolBase BuildExpressions Constructors CreateCopy GetQAtoms GetQBonds IsDataType operator= OEChem::OEQMolType OEChem::OEQMolType::MaxType OEChem::OEQMolType::OEDefault OEChem::OEQMolType::Undefined OEChem::OEQuaternion Constructors CreateCopy Extract GetInverse GetQuaternion _Extract operator= OEChem::OERandomizeTorsions OEChem::OEReadCDXFile OEChem::OEReadFASTAFile OEChem::OEReadHeader OEChem::OEReadMacroModelFile OEChem::OEReadMDLFile OEChem::OEReadMDLQueryFile OEChem::OEReadMDLReactionQueryFile OEChem::OEReadMol2File OEChem::OEReadMolecule OEChem::OEReadMOPACFile OEChem::OEReadOldBinary OEChem::OEReadPDBFile OEChem::OEReadRxnFile OEChem::OEReadSketchFile OEChem::OEReadXYZFile OEChem::OEResidue Constructors GetAlternateLocation GetBFactor GetChainID GetFragmentNumber GetInsertCode GetModelNumber GetName GetOccupancy GetResidueNumber GetSecondaryStructure GetSerialNumber IsHetAtom SetAlternateLocation SetBFactor SetChainID SetFragmentNumber SetHetAtom SetInsertCode SetModelNumber SetName SetOccupancy SetResidueNumber SetSecondaryStructure SetSerialNumber operator bool operator= OEChem::OEResidueHydrogens OEChem::OEResidueIndex OEChem::OEResidueIndex::_1MA OEChem::OEResidueIndex::_2MG OEChem::OEResidueIndex::_5MC OEChem::OEResidueIndex::_5MU OEChem::OEResidueIndex::_7MG OEChem::OEResidueIndex::A OEChem::OEResidueIndex::ABA OEChem::OEResidueIndex::ACE OEChem::OEResidueIndex::ADP OEChem::OEResidueIndex::AF3 OEChem::OEResidueIndex::ALA OEChem::OEResidueIndex::ALF OEChem::OEResidueIndex::ARG OEChem::OEResidueIndex::ASH OEChem::OEResidueIndex::ASN OEChem::OEResidueIndex::ASP OEChem::OEResidueIndex::ASX OEChem::OEResidueIndex::ATP OEChem::OEResidueIndex::BME OEChem::OEResidueIndex::BR OEChem::OEResidueIndex::C OEChem::OEResidueIndex::CGU OEChem::OEResidueIndex::CL OEChem::OEResidueIndex::CME OEChem::OEResidueIndex::CSD OEChem::OEResidueIndex::CYH OEChem::OEResidueIndex::CYM OEChem::OEResidueIndex::CYS OEChem::OEResidueIndex::CYX OEChem::OEResidueIndex::DA OEChem::OEResidueIndex::DC OEChem::OEResidueIndex::DG OEChem::OEResidueIndex::DI OEChem::OEResidueIndex::DMS OEChem::OEResidueIndex::DU OEChem::OEResidueIndex::EDO OEChem::OEResidueIndex::EOH OEChem::OEResidueIndex::FAD OEChem::OEResidueIndex::FOR OEChem::OEResidueIndex::G OEChem::OEResidueIndex::GLH OEChem::OEResidueIndex::GLN OEChem::OEResidueIndex::GLU OEChem::OEResidueIndex::GLX OEChem::OEResidueIndex::GLY OEChem::OEResidueIndex::GOL OEChem::OEResidueIndex::H2U OEChem::OEResidueIndex::HEM OEChem::OEResidueIndex::HID OEChem::OEResidueIndex::HIE OEChem::OEResidueIndex::HIP OEChem::OEResidueIndex::HIS OEChem::OEResidueIndex::HOH OEChem::OEResidueIndex::HSE OEChem::OEResidueIndex::HYL OEChem::OEResidueIndex::HYP OEChem::OEResidueIndex::I OEChem::OEResidueIndex::ILE OEChem::OEResidueIndex::IOD OEChem::OEResidueIndex::LEU OEChem::OEResidueIndex::LIG OEChem::OEResidueIndex::LYN OEChem::OEResidueIndex::LYS OEChem::OEResidueIndex::LYZ OEChem::OEResidueIndex::M2G OEChem::OEResidueIndex::MEN OEChem::OEResidueIndex::MET OEChem::OEResidueIndex::MLE OEChem::OEResidueIndex::MLY OEChem::OEResidueIndex::MOH OEChem::OEResidueIndex::MOL OEChem::OEResidueIndex::MSE OEChem::OEResidueIndex::NAD OEChem::OEResidueIndex::NAG OEChem::OEResidueIndex::OMC OEChem::OEResidueIndex::OMG OEChem::OEResidueIndex::ORN OEChem::OEResidueIndex::PCA OEChem::OEResidueIndex::PEO OEChem::OEResidueIndex::PER OEChem::OEResidueIndex::PHE OEChem::OEResidueIndex::PO2 OEChem::OEResidueIndex::PO4 OEChem::OEResidueIndex::PRO OEChem::OEResidueIndex::PSU OEChem::OEResidueIndex::PTR OEChem::OEResidueIndex::SAR OEChem::OEResidueIndex::SEP OEChem::OEResidueIndex::SER OEChem::OEResidueIndex::SO2 OEChem::OEResidueIndex::SO4 OEChem::OEResidueIndex::SX OEChem::OEResidueIndex::T OEChem::OEResidueIndex::TAU OEChem::OEResidueIndex::THR OEChem::OEResidueIndex::TPO OEChem::OEResidueIndex::TRP OEChem::OEResidueIndex::TYM OEChem::OEResidueIndex::TYR OEChem::OEResidueIndex::U OEChem::OEResidueIndex::UNK OEChem::OEResidueIndex::UNL OEChem::OEResidueIndex::VAL OEChem::OEResidueIndex::YG OEChem::OERMSD OEChem::OERotate OEChem::OERotMatrix Constructors CreateCopy Extract GetInverse GetRotMatrix _Extract operator= OEChem::OERxnRole OEChem::OERxnRole::Agent OEChem::OERxnRole::Catalyst OEChem::OERxnRole::None OEChem::OERxnRole::Product OEChem::OERxnRole::Reactant OEChem::OESameChain OEChem::OESameResidue OEChem::OEScrambleMolecule OEChem::OESDDataPair Constructors GetTag GetValue SetTag SetValue OEChem::OESet3DHydrogenGeom OEChem::OESetAngle OEChem::OESetAnisou OEChem::OESetAtomComment OEChem::OESetComment OEChem::OESetDefaultFlavors OEChem::OESetDefaultIFlavors OEChem::OESetDefaultOFlavors OEChem::OESetDimensionFromCoords OEChem::OESetDistance OEChem::OESetPackedCoords OEChem::OESetPDBData OEChem::OESetSDData OEChem::OESetTorsion OEChem::OEShortestPath OEChem::OESingleBondCount OEChem::OESLNFlag OEChem::OESLNFlag::Canonical OEChem::OESLNFlag::Coords2D OEChem::OESLNFlag::Coords3D OEChem::OESLNFlag::DEFAULT OEChem::OESLNFlag::FCharge OEChem::OESLNFlag::Hydrogens OEChem::OESLNFlag::Isotopes OEChem::OESLNFlag::Kekule OEChem::OESLNFlag::Name OEChem::OESmartsParseOpts OEChem::OESmartsParseOpts::Default OEChem::OESmiFlag OEChem::OESmiFlag::Down OEChem::OESmiFlag::Undefined OEChem::OESmiFlag::Up OEChem::OESmilesAtomCount OEChem::OESMILESFlag OEChem::OESMILESFlag::AtomMaps OEChem::OESMILESFlag::AtomStereo OEChem::OESMILESFlag::BondStereo OEChem::OESMILESFlag::Canonical OEChem::OESMILESFlag::DEFAULT OEChem::OESMILESFlag::ExtBonds OEChem::OESMILESFlag::Hydrogens OEChem::OESMILESFlag::ImpHCount OEChem::OESMILESFlag::ISOMERIC OEChem::OESMILESFlag::Isotopes OEChem::OESMILESFlag::Kekule OEChem::OESMILESFlag::RGroups OEChem::OESMILESFlag::SuperAtoms OEChem::OEString2OEAtomExpr OEChem::OEString2OEBondExpr OEChem::OESubSearch AddConstraint AtomMatch ClearConstraints Constructors GetMaxMatches GetPattern Init Match SetMaxMatches SingleMatch operator bool operator= OEChem::OESubsetMol OEChem::OESuppressHydrogens OEChem::OESymmetryNumber OEChem::OETerminalOCount OEChem::OETerminalSCount OEChem::OETheFunctionFormerlyKnownAsStripSalts OEChem::OETrans Clear Compress Constructors Extract GetInverse GetTransforms PushBack PushFront Transform operator bool operator+= operator= OEChem::OETransBase CreateCopy Extract GetInverse Transform OEChem::OETranslate OEChem::OETranslation Constructors CreateCopy Extract GetInverse GetTranslation _Extract operator+= operator= OEChem::OETripleBondCount OEChem::OETriposAtomNames OEChem::OETriposAtomType OEChem::OETriposAtomTypeNames OEChem::OETriposAtomTypes OEChem::OETriposBondTypeNames OEChem::OETriposOrderAtoms OEChem::OETriposResonantTypeNames OEChem::OETriposType OEChem::OETriposType::Al OEChem::OETriposType::Br OEChem::OETriposType::C1 OEChem::OETriposType::C2 OEChem::OETriposType::C3 OEChem::OETriposType::Ca OEChem::OETriposType::Car OEChem::OETriposType::Ccat OEChem::OETriposType::Cl OEChem::OETriposType::Du OEChem::OETriposType::F OEChem::OETriposType::H OEChem::OETriposType::I OEChem::OETriposType::K OEChem::OETriposType::Li OEChem::OETriposType::Lp OEChem::OETriposType::MAXTYPE OEChem::OETriposType::N1 OEChem::OETriposType::N2 OEChem::OETriposType::N3 OEChem::OETriposType::N4 OEChem::OETriposType::Na OEChem::OETriposType::Nam OEChem::OETriposType::Nar OEChem::OETriposType::Npl3 OEChem::OETriposType::O2 OEChem::OETriposType::O3 OEChem::OETriposType::Oco2 OEChem::OETriposType::P3 OEChem::OETriposType::S2 OEChem::OETriposType::S3 OEChem::OETriposType::Si OEChem::OETriposType::So OEChem::OETriposType::So2 OEChem::OETriposTypeElement OEChem::OETriposTypeIndex OEChem::OETriposTypeName OEChem::OETriposTypeNames OEChem::OEUniMolecularRxn Constructors Init operator bool operator() operator= OEChem::OEVectorBindings Add Constructors Get operator= OEChem::OEWriteCDXFile OEChem::OEWriteConstMolecule OEChem::OEWriteFASTAFile OEChem::OEWriteHeader OEChem::OEWriteMacroModelFile OEChem::OEWriteMDLFile OEChem::OEWriteMol2File OEChem::OEWriteMolecule OEChem::OEWriteMolReturnCode OEChem::OEWriteMolReturnCode::FormatNotWritable OEChem::OEWriteMolReturnCode::OEBWriteFailure OEChem::OEWriteMolReturnCode::TooManyAtoms OEChem::OEWriteMOPACInputFile OEChem::OEWritePDBFile OEChem::OEWriteXYZFile OEChem::SmartsLexReplace OEKekulize OELibraryGen, [1] OEMath::OEConst OEMath::OEConst::c OEMath::OEConst::cal2J OEMath::OEConst::e OEMath::OEConst::eps0 OEMath::OEConst::h OEMath::OEConst::hbar OEMath::OEConst::k OEMath::OEConst::me OEMath::OEConst::mp OEMath::OEConst::mu OEMath::OEConst::NA OEMath::OEConst::R OEMath::OEGeom2DAdd OEMath::OEGeom2DAngle OEMath::OEGeom2DCopy OEMath::OEGeom2DDistance OEMath::OEGeom2DDistance2 OEMath::OEGeom2DDotProd OEMath::OEGeom2DNormalize OEMath::OEGeom2DRotate OEMath::OEGeom2DScale OEMath::OEGeom2DSetLength OEMath::OEGeom2DSubtract OEMath::OEGeom2DTranslate OEMath::OEGeom3DAbsTorsion OEMath::OEGeom3DAdd OEMath::OEGeom3DAngle OEMath::OEGeom3DAngleCoord OEMath::OEGeom3DCopy OEMath::OEGeom3DCrossProd OEMath::OEGeom3DDistance OEMath::OEGeom3DDistance2 OEMath::OEGeom3DDotProd OEMath::OEGeom3DEulerRotate OEMath::OEGeom3DEulerToQuaternion OEMath::OEGeom3DEulerToRotMatrix OEMath::OEGeom3DGetCenterAndExtents OEMath::OEGeom3DGetCenterOfMass OEMath::OEGeom3DMagnitude OEMath::OEGeom3DMakeQuaternion OEMath::OEGeom3DMatrixIdentity OEMath::OEGeom3DMatrixInvert OEMath::OEGeom3DMatrixMultiply OEMath::OEGeom3DNormalize OEMath::OEGeom3DPlanarCoord OEMath::OEGeom3DQuaternionInvert OEMath::OEGeom3DQuaternionRotate OEMath::OEGeom3DQuaternionToRotMatrix OEMath::OEGeom3DRotate OEMath::OEGeom3DRotVectorToTransform OEMath::OEGeom3DScale OEMath::OEGeom3DSetLength OEMath::OEGeom3DSubtract OEMath::OEGeom3DTetraCoord OEMath::OEGeom3DTorsion OEMath::OEGeom3DTranslate OEMath::OEGeom3DUnitQuaternionRotate OEMath::OEGeom3DVolume OEMath::OEGeomDotProd OEMath::OEGeomNormalizeQuaternion OEMath::OEGeomQuaternionMultiply OEMath::OEMath OEMath::OEMath::Deg2Rad OEMath::OEMath::Pi OEMath::OEMath::Pi2 OEMath::OEMath::Rad2Deg OEMolBase oemolistream oemolostream oemolstream.java Example Code oemolstreambase OEPlatform::OEAddLicenseKey OEPlatform::OEAllocate OEPlatform::OEBigEndian OEPlatform::OECallOnce OEPlatform::OECloseIStream OEPlatform::OECloseOStream OEPlatform::OECompress OEPlatform::OECompressionAvailable OEPlatform::OECondition Acquire Broadcast Constructors Release Signal Wait OEPlatform::OECreateDirectory OEPlatform::OECurrentTime OEPlatform::OECycleTime OEPlatform::OEDeallocate OEPlatform::OEDeletePtr OEPlatform::oeendl OEPlatform::oeends OEPlatform::OEFileCorrectSeparators OEPlatform::OEFileCreate OEPlatform::OEFileDelete OEPlatform::OEFileDetermineName OEPlatform::OEFileDeterminePath OEPlatform::OEFileDeterminePathAndName OEPlatform::OEFileExists OEPlatform::OEFileIsDirectory OEPlatform::OEFileIsFile OEPlatform::OEFileIsLink OEPlatform::OEFileIsReadable OEPlatform::OEFileIsWritable OEPlatform::OEFileRandomName OEPlatform::OEFileSize OEPlatform::OEFileTempPath OEPlatform::oeflush OEPlatform::OEGetDomainName OEPlatform::OEGetHostIdent OEPlatform::OEGetHostName OEPlatform::OEGetIPAddress OEPlatform::OEGetMachineName OEPlatform::OEGetPlatformInfo OEPlatform::OEGetProcessorInfo OEPlatform::OEGetTimeOfDay OEPlatform::OEGetUserAppDataDir OEPlatform::OEGetUserDocumentsDir OEPlatform::OEGetUserHomeDir OEPlatform::OEGetUserName OEPlatform::oeifstream Constructors fd openfd OEPlatform::oeigzstream Constructors OEPlatform::OEIsNaN OEPlatform::oeisstream Constructors clear getbuffer operator= reset set OEPlatform::oeistream Constructors close get getbyte getline gettoken open operator>> peekbyte pushline read skip skipbyte skipline OEPlatform::oeiwrapperstream Constructors clear set stream OEPlatform::OELock Constructors OEPlatform::OEMarkMalloca OEPlatform::OEMutex Acquire Constructors Release OEPlatform::oeofstream Constructors append fd openfd OEPlatform::oeogzstream Constructors OEPlatform::OEOnce GetValue Init operator T * operator* operator-> OEPlatform::OEOpenIStream OEPlatform::OEOpenOStream OEPlatform::oeosstream Constructors clear set str OEPlatform::oeostream Constructors close flush open operator<< putbyte write OEPlatform::oeowrapperstream Constructors clear set stream OEPlatform::OEPlatform OEPlatform::OEPlatform::oeerr OEPlatform::OEPlatform::oein OEPlatform::OEPlatform::oenull OEPlatform::OEPlatform::oeout OEPlatform::OEProcessFileName OEPlatform::OEProcessSystemCommand OEPlatform::OERegisterIStream OEPlatform::OERegisterOStream OEPlatform::OERenameFile OEPlatform::OESleep OEPlatform::oestream Constructors eof length operator bool rewind seek size tell OEPlatform::OEThread Constructors GetArg GetReturn Join Run SetArg SetReturn Start OEPlatform::OEThreadLocal Constructors operator T & operator T * operator* operator-> OEPlatform::OETryMutex Acquire Constructors Release Try OEPlatform::OEUncompress OEPlatform::OEUnlink OEPlatform::OEUnlinkDirectory OEReadMDLQueryFile OEReadMDLReactionQueryFile OESystem::__typehash__ OESystem::hanoisort OESystem::OEAddContour OESystem::OEAddGrid OESystem::OEAnd Constructors CreateCopy operator() operator= OESystem::OEAnnotateArrow OESystem::OEAnnotateBox OESystem::OEAnnotateCylinder OESystem::OEAnnotateEllipsoid OESystem::OEAnnotateLine OESystem::OEAnnotateSphere OESystem::OEAnnotateSpline OESystem::OEAnnotateSplineSurface OESystem::OEAnnotateSymbol OESystem::OEAnnotateText OESystem::OEAnnotateTorus OESystem::OEAnnotationPrimitive OESystem::OEAnnotationPrimitive::Arrow OESystem::OEAnnotationPrimitive::Box OESystem::OEAnnotationPrimitive::Container OESystem::OEAnnotationPrimitive::Cylinder OESystem::OEAnnotationPrimitive::Ellipsoid OESystem::OEAnnotationPrimitive::Line OESystem::OEAnnotationPrimitive::Sphere OESystem::OEAnnotationPrimitive::Spline OESystem::OEAnnotationPrimitive::SplineSurface OESystem::OEAnnotationPrimitive::Surface OESystem::OEAnnotationPrimitive::Symbol OESystem::OEAnnotationPrimitive::Text OESystem::OEAnnotationPrimitive::Torus OESystem::OEAnnotationRenderHint OESystem::OEAnnotationRenderHint::Mesh OESystem::OEAnnotationRenderHint::Points OESystem::OEAnnotationRenderHint::Solid OESystem::OEAttachData OESystem::OEBase AddBaseData AddData Clear Constructors CreateCopy DeleteData GetBoolData GetData GetDataIter GetDataType GetDoubleData GetFloatData GetIntData GetStringData HasData IsDataType SetBaseData SetBoolData SetData SetDoubleData SetFloatData SetIntData SetStringData operator+= operator= OESystem::OEBaseData Constructors CreateCopy GetDataType GetSize GetTag OESystem::OEBaseDataT Constructors CreateCopy GetData GetDataType GetSize SetData operator= OESystem::OEBaseDataTPtr OESystem::OEBDataLengthBytes OESystem::OEBFloatEndian OESystem::OEBinaryAnd Constructors CreateCopy operator() operator= OESystem::OEBinaryFalse CreateCopy operator() OESystem::OEBinaryFunction CreateCopy operator() OESystem::OEBinaryNot Constructors CreateCopy operator() operator= OESystem::OEBinaryOr Constructors CreateCopy operator() operator= OESystem::OEBinaryPredicate CreateCopy CreatePredicateCopy operator() OESystem::OEBinaryRead OESystem::OEBinaryWrite OESystem::OEBIntEndian OESystem::OEBitVector ClearBits Constructors CountBits FirstBit FromHexString GetData GetSize IsBitOn IsEmpty LastBit NegateBits NextBit PrevBit SetBitOff SetBitOn SetRangeOff SetRangeOn SetSize ToHexString ToggleBit operator&= operator-= operator< operator= operator[] operator^= operator|= OESystem::OEBitVectorAnd OESystem::OEBitVectorEqual OESystem::OEBitVectorNot OESystem::OEBitVectorNumBytes OESystem::OEBitVectorNumWords OESystem::OEBitVectorOr OESystem::OEBitVectorSub OESystem::OEBitVectorXor OESystem::OEBoundedBuffer Constructors Empty Full Get Put Size OESystem::OEBPeekTag OESystem::OEBReadData OESystem::OEBReadDataLength OESystem::OEBReadOEBase OESystem::OEBReadPOD OESystem::OEBReadTag OESystem::OEBShortEndian OESystem::OEBWriteDataLength OESystem::OEBWriteOEBase OESystem::OEBWritePOD OESystem::OEBWriteTag OESystem::OECastData OESystem::OECheckHelp OESystem::OEClearGridBoundary OESystem::OEColor Constructors CreateCopy GetA GetB GetG GetPackedColor GetR GetRGBA GetText Set SetA SetB SetG SetPackedColor SetR SetRGBA SetText operator!= operator== OESystem::OEColorCreate OESystem::OEColorGet OESystem::OEColorPacked OESystem::OEColorSet OESystem::OEConfigure OESystem::OECopyArray OESystem::OECopyBits OESystem::OEDivideGrid OESystem::OEDots Constructors GetBigStep GetCounts GetSmallStep SetBigStep SetSmallStep Total Update OESystem::OEErrorHandler Clear Constructors Count Debug Error Fatal GetHandlerImpl GetLevel GetStrict Info Msg SetHandlerImpl SetLevel SetOutputStream SetStrict Usage Warning operator= OESystem::OEErrorHandlerImplBase Clear Constructors Count CreateCopy GetLevel GetStrict IncrementCount Msg SetLevel SetStrict OESystem::OEErrorLevel OESystem::OEErrorLevel::Debug OESystem::OEErrorLevel::Default OESystem::OEErrorLevel::Error OESystem::OEErrorLevel::Fatal OESystem::OEErrorLevel::Info OESystem::OEErrorLevel::MAX OESystem::OEErrorLevel::MIN OESystem::OEErrorLevel::Quiet OESystem::OEErrorLevel::Undefined OESystem::OEErrorLevel::Usage OESystem::OEErrorLevel::Verbose OESystem::OEErrorLevel::Warning OESystem::OEFileExtension OESystem::OEFileExtensions OESystem::OEFixedGrid CreateCopy GetDataType GetValues IsDataType SetValues operator() operator[] OESystem::OEFixedMultiGrid CreateCopy GetDataType GetNumGrids GetValues IsDataType SetNumGrids operator[] OESystem::OEGaussian Constructors CreateCopy GetCenter GetColor GetDataType GetPrefactor GetWidth GetX GetY GetZ IsDataType SetCenter SetColor SetPrefactor SetWidth SetX SetY SetZ operator= OESystem::OEGaussianBase GetCenter GetColor GetDataType GetPrefactor GetWidth GetX GetY GetZ IsDataType SetCenter SetColor SetPrefactor SetWidth SetX SetY SetZ OESystem::OEGaussianContainer AddGaussian Clear Constructors CreateCopy DeleteGaussian DeleteGaussians GetColors GetCoords GetDataType GetGaussians GetPrefactors GetWidths IsDataType NumGaussians operator= OESystem::OEGaussianContainerBase AddGaussian Clear DeleteGaussian DeleteGaussians GetColors GetCoords GetDataType GetGaussians GetPrefactors GetWidths IsDataType NumGaussians OESystem::OEGetCenterAndExtents OESystem::OEGetContourColor OESystem::OEGetContourLevel OESystem::OEGetDataType OESystem::OEGetGridFileType OESystem::OEGetGridFormatExtension OESystem::OEGetGridFormatString OESystem::OEGetKappa OESystem::OEGetMemPoolMode OESystem::OEGetOEBReturnString OESystem::OEGetPrefactor OESystem::OEGetRadius OESystem::OEGetTag OESystem::OEGetThreadSafe OESystem::OEGetWidth OESystem::OEGrid Clear Constructors CreateCopy GetDataType IsDataType SetAll SetDim SetMid SetSpacing SetXDim SetXMid SetYDim SetYMid SetZDim SetZMid operator= OESystem::OEGridAbstractBase Clear GetDataType GetDim GetMid GetSize GetSpacing GetTitle GetXDim GetXMid GetYDim GetYMid GetZDim GetZMid IsDataType IsSpacingSet SetTitle OESystem::OEGridAvgVal OESystem::OEGridBase Clear CreateCopy ElementToGridIdx ElementToSpatialCoord GetDataType GetDim GetMid GetSize GetSpacing GetTitle GetX GetXDim GetXIdx GetXInc GetXMax GetXMid GetXMin GetY GetYDim GetYIdx GetYInc GetYMax GetYMid GetYMin GetZ GetZDim GetZIdx GetZInc GetZMax GetZMid GetZMin GridIdxToElement GridIdxToSpatialCoord IsDataType IsInGrid IsSpacingSet IsTitleSet IsXMidSet IsYMidSet IsZMidSet SetTitle SpatialCoordToElement SpatialCoordToGridIdx OESystem::OEGridCopyContents OESystem::OEGridCopyGeometry OESystem::OEGridFileType OESystem::OEGridFileType::Ascii OESystem::OEGridFileType::CCP4 OESystem::OEGridFileType::Grasp OESystem::OEGridFileType::GRD OESystem::OEGridFileType::UNDEFINED OESystem::OEGridFileType::XPLOR OESystem::OEGridGetArch OESystem::OEGridGetLicensee OESystem::OEGridGetPlatform OESystem::OEGridGetRelease OESystem::OEGridGetSite OESystem::OEGridGetVersion OESystem::OEGridHasNonZeroValue OESystem::OEGridIsLicensed OESystem::OEGridMaskType OESystem::OEGridMaskType::Default OESystem::OEGridMaskType::Gaussian OESystem::OEGridMaskType::GaussianMinus OESystem::OEGridMaskType::GaussianSmooth OESystem::OEGridMaskType::GaussianSmoothMinus OESystem::OEGridMaskType::GridMinus OESystem::OEGridMaskType::GridPlus OESystem::OEGridMaskType::ValueMinus OESystem::OEGridMaskType::ValuePlus OESystem::OEGridMaxVal OESystem::OEGridMinVal OESystem::OEGridSameGeometry OESystem::OEGridSetAllElements OESystem::OEGridType OESystem::OEGridType::DifferenceMap OESystem::OEGridType::ElectrostaticGrid OESystem::OEGridType::EonGrid OESystem::OEGridType::ETGrid OESystem::OEGridType::FredGrid OESystem::OEGridType::GenericGrid OESystem::OEGridType::MaxGridType OESystem::OEGridType::RegularMap OESystem::OEHasTag OESystem::OEInitAnnotationHandlers OESystem::OEInitGridHandlers OESystem::OEInitializeHandler OESystem::OEInterface AddDetail AddInterface AddParameter Clear Constructors DeleteInterface DeleteParameter Factory Get GetBrief GetDetail GetInterface GetInterfaces GetList GetName GetOrderPriority GetParameter GetParameters GetTypedParameter Has Parent SetBrief SetName SetOrderPriority operator= OESystem::OEInterpolateBetweenGrids OESystem::OEIsGrid OESystem::OEIsReadableGrid OESystem::OEIsSameTypeTester OESystem::OEIsWriteableGrid OESystem::OEIter Constructors Copy Push Sort ToFirst ToLast operator A & operator A * operator bool operator! operator!= operator* operator++ operator+= operator-- operator-= operator-> operator= operator== OESystem::OEIterBase Constructors Copy Push ToFirst ToLast operator A * operator bool operator* operator++ operator+= operator-- operator-= operator-> OESystem::OELinearInterpolate OESystem::OEMakeFP OESystem::OEMakeGaussians OESystem::OEMakeGridFromCenterAndExtents OESystem::OEMakeHex OESystem::OEMakeMolecularGaussianGrid OESystem::OEMakeRegularGrid OESystem::OEMakeRegularSubGrid OESystem::OEMaskGrid OESystem::OEMaskGridByCoordsAndRadii OESystem::OEMaskGridByMolecule OESystem::OEMaskGridValues OESystem::OEMemPoolMode OESystem::OEMemPoolMode::BoundedCache OESystem::OEMemPoolMode::Default OESystem::OEMemPoolMode::Mutexed OESystem::OEMemPoolMode::SingleThreaded OESystem::OEMemPoolMode::System OESystem::OEMemPoolMode::ThreadLocal OESystem::OEMemPoolMode::UnboundedCache OESystem::OEMoveArray OESystem::OEMultiGrid Clear Constructors CreateCopy GetDataType IsDataType SetDim SetMid SetSpacing SetValues SetXDim SetXMid SetYDim SetYMid SetZDim SetZMid operator= OESystem::OEMultiplyGrid OESystem::OENot Constructors CreateCopy operator() operator= OESystem::OENumberToString OESystem::OENumContours OESystem::OEOr Constructors CreateCopy operator() operator= OESystem::OEParameter AddAlias AddDetail AddIllegalRange AddIllegalValue AddLegalRange AddLegalValue AddStringDefault AddStringValue ClassID ClearDefaults ClearValues CreateCopy GetAliases GetBrief GetCommand GetDetail GetElement GetHasDefault GetHasValue GetIllegalRanges GetIllegalValues GetIsList GetKeyless GetLegalRanges GetLegalValues GetName GetOrderPriority GetRequired GetStringDefault GetStringDefaults GetStringValue GetStringValues GetVisibility IsLegalString IsSet IsSetToString Load LoadDefault LoadValue ReadValueAndDefaultBinary SetBrief SetCommand SetElement SetIsList SetKeyless SetName SetOrderPriority SetRequired SetStringDefault SetStringValue SetVisibility TypedParameterTypeID ValueAndDefaultBinarySize WriteValueAndDefaultBinary OESystem::OEParamVisibility OESystem::OEParamVisibility::Hidden OESystem::OEParamVisibility::MAX OESystem::OEParamVisibility::Normal OESystem::OEParamVisibility::Simple OESystem::OEParseCommandLine OESystem::OEParseCommandLineLW OESystem::OEParseParameterFile OESystem::OEPRIMITIVE_ITER OESystem::OEProtectedBuffer Constructors Get Put OESystem::OERandom Constructors NextFloat NextInt Seed TimeSeed OESystem::OEReadGrid OESystem::OEReadOldStyleGrid OESystem::OERegisterMolParameters OESystem::OERegisterOEBInitializer OESystem::OERotate OESystem::OEScalarGrid Clear Constructors CreateCopy GetDataType GetType IsDataType SetType operator= OESystem::OESetMemPoolMode OESystem::OESetThreadSafe OESystem::OESetupGrid OESystem::OESigmaNormalizeGrid OESystem::OESkewGrid AsRegularGrid Clear Constructors CreateCopy ElementToGridIdx ElementToSpatialCoord GetDataType GetDim GetMid GetReentrant GetSize GetSpaceGroup GetSpacing GetTitle GetType GetUnitCell GetValues GetXDim GetXMid GetYDim GetYMid GetZDim GetZMid HasSpaceGroup HasUnitCell IsDataType IsRegular IsSpacingSet IsTitleSet SetDim SetMid SetReentrant SetSpaceGroup SetSpacing SetTitle SetType SetUnitCell SetValues operator bool operator= OESystem::OEStaticGetTag OESystem::OEStopwatch Constructors Elapsed Lap Start OESystem::OEStringJoin OESystem::OEStringLower OESystem::OEStringMatch OESystem::OEStringSimplifyWhiteSpace OESystem::OEStringStripWhiteSpace OESystem::OEStringTokenize OESystem::OEStringTokenizeQuoted OESystem::OEStringToNumber OESystem::OEStringTranslate OESystem::OEStringUpper OESystem::OESubtractGrid OESystem::OESystem OESystem::OESystem::OEBlack OESystem::OESystem::OEBlue OESystem::OESystem::OECyan OESystem::OESystem::OEDarkBlue OESystem::OESystem::OEDarkBrown OESystem::OESystem::OEDarkCyan OESystem::OESystem::OEDarkGreen OESystem::OESystem::OEDarkGrey OESystem::OESystem::OEDarkMagenta OESystem::OESystem::OEDarkOrange OESystem::OESystem::OEDarkPurple OESystem::OESystem::OEDarkRed OESystem::OESystem::OEDarkRose OESystem::OESystem::OEDarkSalmon OESystem::OESystem::OEDarkYellow OESystem::OESystem::OEGreen OESystem::OESystem::OEGrey OESystem::OESystem::OELightBlue OESystem::OESystem::OELightBrown OESystem::OESystem::OELightGreen OESystem::OESystem::OELightGrey OESystem::OESystem::OELightOrange OESystem::OESystem::OELightPurple OESystem::OESystem::OELightSalmon OESystem::OESystem::OELimeGreen OESystem::OESystem::OEMagenta OESystem::OESystem::OEMediumBlue OESystem::OESystem::OEMediumBrown OESystem::OESystem::OEMediumGreen OESystem::OESystem::OEMediumOrange OESystem::OESystem::OEMediumPurple OESystem::OESystem::OEMediumSalmon OESystem::OESystem::OEMediumYellow OESystem::OESystem::OEOliveBrown OESystem::OESystem::OEOliveGreen OESystem::OESystem::OEOliveGrey OESystem::OESystem::OEOrange OESystem::OESystem::OEPink OESystem::OESystem::OEPurple OESystem::OESystem::OERed OESystem::OESystem::OERoyalBlue OESystem::OESystem::OEThrow OESystem::OESystem::OEWhite OESystem::OESystem::OEYellow OESystem::OETanimoto OESystem::OETranslate OESystem::OETypedParameter AddDefault AddValue GetDefault GetDefaults GetSetting GetSettings GetValue GetValues SetDefault SetValue TypedParameterTypeID OESystem::OEUnaryFalse OESystem::OEUnaryFunction CreateCopy operator() OESystem::OEUnaryPredicate CreateCopy CreatePredicateCopy operator() OESystem::OEUnknownOEBDataTagName OESystem::OEWallTimer Constructors Elapsed Lap Start OESystem::OEWriteGrid OESystem::OEWriteHtml OESystem::OEWriteInterfaceConfigurationFile OESystem::OEWriteOldStyleGrid OESystem::OEWriteSettings OESystem::PopBaseDataT OESystem::PopBaseDataTPtr OESystem::PushBaseDataT OESystem::PushBaseDataTPtr OESystem::RegisterMolParameters OEUniMolecularRxn, [1] open OEChem::oemolstreambase OEPlatform::oeistream OEPlatform::oeostream openfd OEPlatform::oeifstream OEPlatform::oeofstream openstring OEChem::oemolistream OEChem::oemolithread OEChem::oemolostream OEChem::oemolothread operator A & OESystem::OEIter operator A * OESystem::OEIter OESystem::OEIterBase operator bool OEChem::OECliqueSearch OEChem::OEConfBaseT OEChem::OEFuzzy OEChem::OEGraphMol OEChem::OELibraryGen OEChem::OEMCMolBaseT OEChem::OEMCSSearch OEChem::OEMatchFunc OEChem::OEMol OEChem::OEMolBase OEChem::OEQMol OEChem::OEResidue OEChem::OESubSearch OEChem::OETrans OEChem::OEUniMolecularRxn OEChem::oemolistream OEChem::oemolostream OEChem::oemolthreadbase OEPlatform::oestream OESystem::OEIter OESystem::OEIterBase OESystem::OESkewGrid operator C * OEChem::OEConfBaseT operator delete OEChem::OEGetNbrAtom operator double * OEChem::OECoordArray operator new OEChem::OEGetNbrAtom operator OEMCMolBase & OEChem::OEMol operator OEMolBase & OEChem::OEGraphMol OEChem::OEQMol operator OEPlatform::oeistream & OEChem::oemolistream operator OEPlatform::oeostream & OEChem::oemolostream operator OEQMolBase & OEChem::OEQMol operator T & OEPlatform::OEThreadLocal operator T * OEPlatform::OEOnce OEPlatform::OEThreadLocal operator! OEChem::OEFuzzy OESystem::OEIter operator!= OEChem::OEFuzzy OESystem::OEColor OESystem::OEIter operator&& OEChem::OEFuzzy operator&= OESystem::OEBitVector operator() OEBio::OEHasPDBAtomIndex OEBio::OEIsAlphaCarbon OEBio::OEIsBackboneAtom OEChem::OEAtomIsInResidue OEChem::OEAtomIsInRing OEChem::OEBondIsInRing OEChem::OEGetNbrAtom OEChem::OEHasAtomName OEChem::OEHasAtomStereoSpecified OEChem::OEHasAtomicNum OEChem::OEHasBondStereoSpecified OEChem::OEHasChainID OEChem::OEHasFragmentNumber OEChem::OEHasIdx OEChem::OEHasMapIdx OEChem::OEHasOrder OEChem::OEHasResidueNumber OEChem::OEInSamePart OEChem::OEIsAromaticAtom OEChem::OEIsAromaticBond OEChem::OEIsCAlpha OEChem::OEIsCarbon OEChem::OEIsChiralAtom OEChem::OEIsChiralBond OEChem::OEIsHalide