Search.setIndex({desctypes:{},terms:{setspac:[16,209,166,65,143,222],cn1:[219,173],oeresidu:[72,31,48,230,51,105,120,121,38,226,71],ref1:38,ullman:[17,66],four:[116,2,170,208,232,98,141,66,219,58,130],gaussiansmooth:101,prefix:[135,0,100],sleep:167,deleteinterfac:[166,232,211,98],placement:100,waal:[238,159,17,38],setsymmetryclass:[238,6,71],forget:247,disappear:[116,208],sc22:167,accur:[208,66,224],"const":[4,5,7,8,9,10,11,12,16,18,19,20,21,22,23,25,26,27,28,167,31,32,35,36,38,3,41,42,44,46,47,48,50,51,53,54,55,117,57,59,252,64,65,183,68,69,70,73,87,6,236,79,80,81,84,86,74,88,89,90,91,92,93,94,256,97,234,99,102,181,107,108,250,111,112,114,115,156,56,118,119,120,121,122,124,126,127,131,132,133,137,138,139,141,143,144,145,149,150,151,258,153,155,157,158,160,164,165,37,168,172,40,174,177,103,182,184,187,189,192,195,179,197,198,200,201,190,206,207,209,211,216,217,220,222,225,227,228,230,231,232,233,98,214,237,238,240,244,246,248,251,226,254,255,257],swab:174,spew:98,getxmin:[131,16,209,166,138,28,143],alf:1,edward:17,forcefield:38,under:[45,116,135,233,141,128,161,222],cm7:223,cm5:223,oepreserveresinfo:[72,208,196,38,78],oerandomizetors:[72,38,233],cm2:223,cm1:223,oeaddsddata:[72,38],digit:[0,231],everi:[116,167,232,63,161],downstream:45,setstartingmateri:[116,71,32],"void":[187,67,20,191,209,192,119,9,10,65,123,124,11,12,126,127,199,68,106,216,131,16,133,73,190,18,207,228,6,188,137,138,22,23,25,80,27,28,143,30,177,255,153,86,87,32,151,152,89,132,233,92,94,238,38,3,240,134,42,43,47,46,246,214,181,172,174,217,54,55,254,220,57,197],getpar:[186,6,119,52,238,127,71],sheridan:17,oehasalphabetaunsat:[140,244,182],implicit:[72,100,2,116,247,208,231,52,178,141,38,13,58,83,224],jacm:17,oehierfrag:[35,61,51,48,72],oesetcrystalsymmetri:[72,120],affect:[116,230,208,232,38,13,66],oeconstit:26,lefthand:39,vast:167,oeparamet:[72,68,166,211,197],oeproperti:[49,72,78],nccn:116,ncco:116,fztrue:193,symyx:100,ref:[45,204,63,135,52,120,66,140,128,130],cme:[1,232],aromask:[215,105],"2gby":100,oemmffremapel:[72,38],roadblock:45,solid:175,oedeletepdbdata:[72,38],vector:[233,4,20,151,231,230,18,119,232,9,174,124,23,38,12,238,219,224],oebreadoebas:[72,174],math:128,verif:116,servic:[129,167,17],oeannotatebox:[72,174],oemolithread:[72,100,87,10,38,160,167,71],setbgn:[127,119,186,71],oecreateslnstr:[72,38,161],oebdefaultopt:[72,38],oearomodeldaylight:[193,215,105,130],direct:[100,2,63,257,233,174,219,58],oemdlstereofrombondstereo:[72,38,233],oegetaminoacidcod:[72,38,232],setarg:[43,242],oemdlhaspar:[72,38],ilist:211,experi:[45,232,17,38,222],qmol:[116,13,38,71,20],chem:17,residueindex:120,"1rev":222,maxpath:38,nel:174,yalkowski:17,hide:[45,178],oesmilesflag_isotop:83,neg:[100,2,208,232,13,222],sln:[17,247,105,78,215,38,218],explicitdegre:77,oeelemno:[72,204,33,78,238,159],pybondpred:232,setsaverang:[22,66,71,177],oemdlqueryopt:[116,72,78,38,125,13],eqon:[77,66],"new":[116,126,128,71,100,17,204,257,208,213,141,24,161,167,222,224,230,231,232,233,235,45,173],oenormmodel:38,ever:[140,0,230,232],seekp:[214,71],oeiwrapperstream:[72,187,185,88,232,242,30],getsiz:[131,16,240,63,228,209,166,147,65,138,80,28,143,57],elimin:[140,116,167,208,222],abov:[0,159,161,58,221,224],getqbond:[54,6,71,20],men:[1,141],symctarrai:38,here:[116,63,178,141,66,128,13],removeatom:[71,12],oewritemolreturncod:[72,245,78],isdatatyp:[20,6,119,65,124,12,127,71,131,16,190,18,209,138,23,80,28,143,86,151,233,238,42,166,246,172,54],allowreorderatom:217,path:[45,72,133,135,230,233,66,129,224],bromid:231,interpret:[0,100,2,116,208,232,235,141,161,13,167,222],acceptor:[49,100],glh:1,rcsb:[208,231,233,98],oeassignmdlhydrogen:[72,58,38],interatom:17,gln:[1,222],c1cccn:173,oereadcdxfil:[72,38,161],hydrat:17,demonstr:[45,116,204,63,208,232,222,161,66,128,140,219,129,167,130],glx:1,gly:[1,83],aki:17,oepdbiflag:38,oegetstereo:[72,38],oeformat_smi:[161,230,130],getzidx:[131,16,209,166,138,28,143],ne2:223,glu:1,ne1:223,oehasbondstereospecifi:[244,72,165,71,241,182],mmff94:141,oeblu:180,value_typ:239,gasteig:[247,72,129,17],setgz:[214,71,137],oegasteigerinitialcharg:[247,72,38],oegetdomainnam:[72,100,133],oegetcenterandext:[72,230,174,38,128],setcent:[166,42,86],brought:208,bashrc:135,unix:[161,208,213],c19:223,oestring2oeatomexpr:[72,38],oegridbas:[72,16,246,131,209,166,174,138,80,28,143],nitrat:208,oesamechain:[72,38],total:[166,167,2,52,38,25,129,58,66],oeisextens:[72,38],unit:[231,38],highli:[45,13,208,222],oeregisteroebiniti:[72,174],dna:208,oewriteset:[72,230,233,174],oenetcharg:[72,38,224],oestaticgettag:[72,174],leaki:45,hanoi:224,oegetphi:[72,120],ishetatom:[121,71],vol:17,concret:[45,128,173],call:[116,63,66,128,129,130,100,204,135,257,208,141,24,140,161,167,222,224,230,231,232,233,98,235,38,219,13,178,45,173,247,58],oegetdist:[72,38],getformalcharg:[247,238,6,71,52],recommend:[116,173,208,141,66,13,167],inner:140,type:[116,161,63,20,65,124,66,12,128,129,131,16,17,204,18,208,209,138,22,141,80,140,219,167,143,151,230,100,233,232,235,38,28,13,45,186,247,52,174,177,255],tell:[187,137,100,167,73,185,88,222,192,233,234,21,214,30,242,134,29,181,71],bromin:[219,58],swap:222,grier:17,maxmatch:38,relax:[0,208,116],getatom:[61,63,20,9,124,66,12,129,130,71,204,18,6,23,140,219,31,151,254,233,178,35,159,48,51,54,238],relat:[135,13,100,116],oegridgetsit:[72,174],ioniz:58,notic:[116,2,173,213,141,161,167],warn:[166,174,161,173,230,208,231,233,98,220,141,38,82,128,140,219,167,222,224],preprocess:116,oemcstyp:[72,203,78,22,141,177],oearomodelmdl:[193,215,105,130],resnam:[35,51,48],hold:[45,167,238,63],must:[45,116,167,161,232,38,128,219,129,58,66],oefpos_t:[100,187,88,230,137,214],oeaddmol:[140,72,230,38],join:[167,43,242],oegetprocessorinfo:[72,133],hanser:[129,17],oesubsetmol:[72,232,233,38,140,128,66],setup:116,work:[45,116,63,208,231,233,241,167,222],respres:233,getsaverang:[22,177,71],ccp4:[202,63],root:233,oeiterbas:[20,172,9,120,124,197,12,128,68,72,190,204,18,6,211,137,22,23,26,27,222,31,32,151,89,254,35,238,38,166,246,48,51,217,54,177,117],setspacegroup:[65,166],oenotatom:129,novic:45,chemdraw:[161,141,233],selectpart:[153,71],give:[45,116,66,233],oewalltim:[191,72,100,166],indic:[0,63,116,128,129,72,100,186,135,140,161,83,222,230,231,232,233,98,235,238,219,178,204,173,52],cautiou:128,sethandlerimpl:[220,166],gcp:231,oetrymutex:[72,123,208,242,233],setvis:[68,166,197],sgnumber:120,want:[161,173],deletedbond:49,oebreadtag:[72,174],bondinttyp:224,unsign:[20,7,9,10,12,16,18,19,22,23,25,26,27,161,167,31,32,35,36,38,3,42,46,47,48,51,52,54,55,220,57,63,65,68,73,186,80,81,86,87,89,100,94,256,158,155,102,181,172,119,120,124,128,131,133,137,138,139,141,143,149,151,153,157,159,28,117,246,165,37,174,177,184,187,197,198,199,190,206,209,211,217,219,228,254,233,214,238,240,204,255],instanti:167,declar:[13,167,173,116],isingrid:[131,16,63,209,166,138,28,143],end:[100,4,173,228,230,208,128,232,233,186,161,215,141,38,97,140,13,222,224],oemultiplygrid:[72,174],oeofstream:[88,21,181,242,72],stereochemistri:[72,17,186,233,231,230,208,128,232,52,98,38,219,13,222,224],incrementcount:[94,166],oebinaryfals:[72,166,227,258,53],setact:[124,233,71,18],classifi:141,oerotmatrix:[72,46,11,71],clearstartingmateri:[71,32],how:[45,72,241,204,63,116,135,222,128,232,178,161,235,159,66,219,140,13,129,167,130],oemacromodeltypeel:[72,38],ent:[231,232,98],misconcept:140,env:[45,116,173,63,204,128,178,161,66,219,140,13,129,167,130],bondstereo:[49,249,83,105],yvonn:17,pharmacophor:17,perspect:45,updat:[166,208,232,233,98,141,38,25,58,130],c1ccc:[116,100,173],maxdist:[117,38],rise:167,currentresidu:105,lai:208,cz2:223,cz3:223,setreturn:[43,242],dietrich:17,c1ccn:173,oecartesiantointern:98,diagram:167,befor:[0,100,161,173,116,247,231,230,128,235,13,219,167,83,130],wrong:[100,173],mesh:175,distort:235,pushbasedatatptr:[72,174],remov:[116,100,204,173,233,222,141,66,128,13,129,130],righthand:39,core:[100,230],hi_val:68,serialnumb:196,parallel:[140,72,167,128],umatch:[116,22,32],typer:17,amin:116,oegetformatstr:[72,38],kekul:[72,100,116,49,208,231,105,232,235,141,96,83,130,24],third:[167,66,208],oemultigrid:[72,166,246,209,174,138,80,28,222,224],isvalid:[255,161,71,178],symclass:49,clearmcmol:[124,71,18],npl3:136,oemolbas:[184,116,186,20,119,120,195,124,66,12,128,129,174,130,71,72,100,204,18,135,257,156,137,22,23,201,217,140,108,222,255,164,74,32,151,230,231,232,233,178,35,159,38,161,13,45,99,168,246,173,250,40,52,69,225,54,177,117,238,208],maintain:[13,222,224],green:17,incorpor:221,oebitvectornumbyt:[72,174],mechan:[45,116,173,213,38,161,128,167],order:[0,2,63,20,140,124,66,12,128,68,129,72,100,17,204,18,257,208,130,23,116,219,167,222,151,230,232,233,178,235,38,161,241,13,45,186,247,105,58,141],gridtype1:174,oper:[2,4,5,7,8,9,10,11,12,16,18,19,20,21,22,23,24,26,27,28,29,30,31,32,35,36,37,42,47,48,50,51,53,54,55,56,59,116,61,63,64,65,183,70,71,72,73,212,6,236,79,80,81,84,86,88,89,90,91,93,220,256,97,158,99,100,102,181,107,108,250,111,112,114,115,156,172,118,119,121,122,124,126,127,128,131,132,134,137,138,149,141,143,144,145,150,151,152,153,155,157,160,161,165,166,167,168,170,147,177,178,103,182,184,185,187,189,192,195,179,198,200,201,190,206,207,208,209,211,213,217,222,224,227,228,230,231,232,233,234,214,237,238,240,242,244,246,248,251,252,226,255,257,258],oedetermineringsystem:[72,129,38],composit:238,oetruetyp:174,softwar:[45,100,17,173,63,213,170,208,232,233,98,235,247,141,24,140,13,58,83,130],consent:213,over:[116,161,63,222,230,208,128,178,66,219,140,13,129,83,130,224],oesmilesflag_canon:83,oeclearpdbdata:[72,38,222],accelri:[159,38,232],oemempoolmod:[15,72,176,167],london:17,tetrahedr:[219,231,83,38,39],oewriteconstmolecul:[72,167,38,222,161],oegrei:180,c1cnccn1:130,setassignmapidx:[71,32],vari:[135,167,83],oehasresidu:[72,38],"\u00e5ngstr\u00f6m":[100,173,170,208,235,141,24,13,58,83,130],ligand:[100,17,230,208,129,224],fit:120,setatomicnum:[238,208,6,71],del:[185,29,134,173,30],grididxtoel:[131,16,209,166,138,28,143],stereodefin:49,oeatomstereo_righthand:219,comprehend:135,better:[232,208,222,98],carri:[45,116,222,233],termask:215,oeolivegrei:180,pdb2gci:141,comprehens:[58,66],oeatomstereo_undefin:[219,231],strictsmirk:[156,38,32],oegetsdbasedata:[72,38],setwidth:[166,42,86],easier:[204,224],addbondaliphaticconstraint:[13,125],split:[208,233,66,161,129,222],orderconf:[128,124,224,71,18],them:[116,100,161,173,231,232,233,241,128,140,13,167,83,222],getlegalvalu:[68,166,197],thei:[0,63,116,66,128,129,100,208,141,24,140,219,167,222,224,230,231,178,235,38,241,45,170,58],fragment:[116,63,173,241,161,222,224],similar:[45,72,100,17,161,231,232,178,141,24,128,255,219,71,66],safe:[100,167,230,232],oemempoolmode_threadloc:167,low_val:68,retainpolar:38,"break":[45,219,233],oeatombas:[5,7,9,12,18,19,20,22,23,31,35,36,38,41,45,48,50,51,52,54,117,59,116,183,70,71,72,186,6,79,81,83,84,254,93,56,233,158,155,107,108,250,112,115,119,120,124,126,129,130,135,139,140,141,145,151,99,157,159,37,200,178,103,184,189,144,195,179,198,201,204,208,217,219,222,177,230,231,232,256,98,237,238,246,247,226],getymin:[131,16,209,166,138,28,143],oegasteigerpartialcharg:[247,72,38],oegetangl:[72,38,128],anis:[49,208],getymid:[131,16,209,166,65,138,80,28,143],oegetaromat:[72,100,38],getkeyless:[68,166,197],choic:[128,129,2,222],vidal:17,anion:[58,2],allbyal:148,setbfactor:[121,71],cc1co:[219,130],setexplicithydrogen:[116,71,32],getvalu:[131,16,63,242,152,209,166,92,65,138,197,143,71],oenorm:[72,38],isregular:[65,166],arrow:[100,171],each:[0,63,116,66,128,129,100,135,208,141,140,161,167,83,222,230,231,232,233,98,235,38,219,13,178,45,173,247],debug:[220,100,166,82],electrostat:[247,38,232],went:173,higher:[100,66,232],side:[116,100,72,98,141,38,167,222,224],bond:[0,114,116,8,66,12,128,2,129,251,130,72,100,17,247,204,135,257,208,141,24,140,219,167,83,222,224,118,230,231,232,233,98,235,38,241,13,178,45,165,186,173,102,105,52,170,58],oegetplatforminfo:[72,133],ncoord:[89,3],mdl:[116,72,100,208,78,213,215,141,24,218,161,222,224,230,231,232,233,98,235,238,38,13,45,247,105,58],concord:0,list:[0,63,116,66,128,129,130,4,204,135,141,140,161,167,224,232,233,98,38,219,13,178,45,174,58],enorm:45,oeassignserialnumb:[72,38],norbornan:129,grid2:174,oeannotatecylind:[72,174],aidx:140,oegetsoletriplebond:[72,38],isempti:[166,228],extract:[132,46,207,89,231,11,17,230,71,66],getintdata:[20,6,119,65,124,12,127,71,131,16,190,18,209,138,23,80,28,143,86,151,238,42,166,246,172,54],gol:1,oeassumpt:[110,35,104,120,72],oemdlperceivepar:[72,38,233,98],addpair:[71,9],mygetexplicitdegre:178,goe:[45,116],smirk:[72,100,116,170,233,213],dst:[128,38,3,174],crucial:66,pasqual:17,acetsali_1:128,oeformat_sln:[161,130],acetsali_3:128,daniel:17,intermolecular:17,smi:[116,173,105,78,215,66,218,161,222],reader:[45,0,100,204,230,208,231,232,233,235,141,24,161,222,224],rmsd_selftest:231,size:[185,2,63,7,66,187,129,71,72,100,134,137,21,216,167,192,30,224,228,88,230,153,231,234,214,38,73,242,166,29,181,222],smart:[45,72,100,2,116,170,208,231,232,233,252,213,184,24,13,224,222,66],oepdboflag_radiu:98,linear:[140,208],navig:213,oebinaryiohandl:[246,233],oenormmodeldefault:38,getassignmapidx:[71,32],regularmap:60,setxdim:[143,16,209,166],free:[45,72,167,17],dequ:4,c3_:223,hvydegre:77,"2usn":222,useh:38,oeisbackboneatom:[244,72,61,179,182],oedarkros:180,oeistream:[72,100,133,187,185,88,192,231,234,230,30,242,181,137,10,174,71,224],std:[120,187,4,20,192,119,9,10,65,124,255,12,68,16,133,73,18,209,211,137,21,23,149,80,28,167,143,224,87,228,151,230,231,233,234,94,238,38,160,92,47,121,246,214,181,174,220],chiral:[2,66,72,17,186,135,208,77,141,24,219,83,222,224,231,232,233,98,38,241,170,249,52,49],angl:[100,231,132,141,38,3,128,219,222],atm:38,vijai:17,accumul:[230,3],hetbond:[105,224],filter:128,oegetuserhomedir:[72,133],isi:[100,98,213,141,161,222],rais:[100,208],iso:[208,222,232],oeformat_fasta:[161,130],ism:[230,105,78,215,218,222],oefiletemppath:[72,133],regress:[100,98],tellurium:[0,231],subtl:[45,116,24],onto:[128,167,66,233],fmt:[100,38],oemolthread:167,rand:228,rang:[178,38,98],atomnam:[49,196,105],oegeom3dmatrixident:[72,3],independ:[116,100,2,0,247,231,128,233,178,13,140,219],getresiduenam:[31,61],robustifi:208,necess:167,restrict:[116,100,230,66,128,167],suitabl:[161,230,38],oeopenostream:[72,133],alreadi:[45,100,241,63,231,235,141,38,140,128,224],oegetanis:[72,38],wrapper:[231,232],fluorin:58,wasn:208,oeyellow:180,thick:[141,174],constarg:[182,227],pdb2ii5:141,primari:222,setbrief:[68,166,211,197],midi:[65,143,16,209],cartesian:[128,162,63,98],oeatomgetresidu:[72,38],rewritten:[230,208,232],nomin:63,wildli:233,oemakeregularsubgrid:[72,174],eqp:77,radioisotop:38,sometim:[128,100,232,173,178],oeunarytobinaryand:[227,233,53],oeatomstereo:[219,238,78,39,72],mercuri:100,getquaternion:[132,71],fromhexstr:[100,228,166,224],bondmemberpr:49,master:72,too:[233,63],oebrotcompressopt:[72,38],includehydrogen:8,isrxn:[204,20,151,18,124,54,12,23,71],john:17,leach:17,namespac:[60,1,113,62,116,193,194,196,66,125,210,14,15,72,100,202,203,75,135,229,76,208,77,171,215,141,24,218,219,167,83,223,85,146,148,33,154,232,82,34,101,159,38,39,161,13,205,162,163,45,245,204,49,243,104,249,105,175,253,238,180,136,109,96],setremoveunmappedfrag:[116,71,32],tool:[100,58,222],oepreserveresinfo_atomnam:208,oebondstereo_cistran:219,phipsi:222,newfnam:133,nh1:[116,223],pyrylium:208,nh3:116,nh2:[208,223],sulphur:66,tmol:13,technic:[140,247],"5mu":208,getparentbond:[127,71],target:[13,195,208,66,178],keyword:232,consequ:[170,13],provid:[116,63,66,128,129,100,204,208,161,167,222,230,232,233,178,235,159,38,219,13,158,45,173,170,247],expr:[38,252],getstringvalu:[68,166,197],second:[116,173,247,208,24,161,219,66],omc:[1,208],project:[45,232],matter:[72,167,213,116],iron:[58,208],ispolarhydrogen:[238,6,71],oebitvectorsub:[72,174],minut:208,c1cccc2c1:129,oeisterminaloxygen:[72,38],getoeresidu:[31,51,61,48],oelingosim:[255,72,71],chainid:[35,196],c2cocc2c3:130,rao:17,modern:[167,17,232],p_minu:109,parenthes:116,topolog:[13,17],seed:[247,199,166,233],manner:[135,116,222,128],oerotam:120,hydroxylysin:141,infring:213,fasta:[218,161,215,105,78],incompat:[141,233],seek:[45,137,100,167,73,185,88,222,192,231,233,234,21,30,242,187,134,29,181,71],minu:208,oegeom2dsubtract:[72,3],ismet:[238,6,71],dbref:100,oepdbatomnam:[72,223,78],n_minu:109,latter:[128,222,232],superimpos:170,thorough:135,maxj:63,maxk:63,high:[45,116,100,2,230,231,232,222,235,38,161,129,130],maxi:63,oegetsoleneighbor:[72,38],fname:[133,38],oeuncompress:[72,133],transmit:213,spicoli:141,methodolog:17,adddetail:[68,166,211,197],even:[45,116,100,230,208,231,232,233,98,24,178,140,219,167,66],mask_grid:174,settrac:[71,137],insur:[13,208],oereadxyzfil:[72,257,38,161],shall:213,oehasmapidx:[244,72,157,71,241,182],object:[45,116,100,158,173,63,135,257,208,232,233,178,230,141,66,128,140,13,167,222],oemcsmaxatomscompletecycl:[72,230,71,195,66,222,201],lexic:116,mario:17,oeassigncovalentradii:[238,72,159,38,232],regular:[161,208],"1srf":100,letter:[17,233],furan:0,ostream:231,oesystem:[4,5,7,8,9,12,100,18,19,20,22,23,24,27,167,31,32,35,36,38,45,48,50,51,54,117,59,65,183,147,70,72,6,79,81,84,87,89,254,93,56,256,97,98,155,102,180,107,112,114,115,172,118,119,120,124,126,158,137,145,151,258,153,157,165,166,37,174,176,200,103,182,184,189,144,179,198,190,251,257,208,217,222,224,177,230,231,232,233,227,237,238,240,246,226],oesortedit:26,tyr:1,resperceiv:104,oeperceiv:[72,249,78],simplic:167,doi:17,oemdlhasincorrectbondstereo:[72,141,38],oegeom2ddistance2:[72,3],ci00066a002:17,oeparsesmil:[45,72,173,116,257,208,232,233,178,230,38,161,219,129,130,66],flow:167,oeformat_:[161,230,38,130],oeerrorlevel_debug:100,doe:[100,161,173,233,178,213,141,38,128,219,167,66],dummi:[232,224],bracket:141,wildcard:[238,2,224],getoemol:128,setislist:[68,166,197],oeiflavor_cdx:161,oeissingleoraromat:[72,38],insertcod:196,oeassignzap9radii:[238,72,100,159,38],setdefault:[166,197],oehasfragmentnumb:[244,72,155,71,241,182],prim:224,octachlorodirhen:0,rascal:17,random:[100,232,233],radiu:[72,100,174,49,232,231,105,52,98,215,141,38,238,159,120],oegetunimolecularrxnit:[72,38],radii:[100,17,174,235,141,38,238],pka:58,oedeterminearomaticringsystem:[72,129,38],radic:[230,208],facto:247,involv:[116,128],absolut:[170,128,167,38,161],ci960013p:17,cyh:1,acquir:[208,106,123,67,222,242],ellipsoid:171,bondedresidu:104,explain:[13,208,128],configur:[17,257,233,128,219,167],oeprottortyp:[110,72,76],oehasbondidx:[241,158],bush:17,getord:[186,119,178,127,219,71],thiophosph:208,setrgba:[166,149],rich:[45,178],c2c3:130,meng:[235,17],rnum:32,oegeom3dtetracoord:[72,3],biophys:17,hasidx:[244,182],oegeom3drotmatrixtoquaternion:232,prodrg:17,likewis:[219,230,66],stop:[231,232],setmcsfunc:[22,231,66,71,177],oeminiatom:[222,98],getmcmol:[71,12],mechanist:17,getmaxseqidx:[61,55],p_oxide_plu:109,report:[100,208,222,173,232],eqhalogen:[77,66],oemdlcorrectbondstereo:[72,141,38,232],symmetr:2,p_pyridin:109,oeaddcontour:[72,174],thormann:17,adddefault:[166,197],oeistream_alloc_t:133,bloat:167,oemolbaseimpl:232,patch:141,sens:[128,167,141],setbitoff:[166,228],bad:230,contrast:38,result_typ:126,setunitcel:[65,166],oewhit:180,sp3d2:62,multipol:231,oegetsddatapair:[72,38],oeendl:[72,133],setbiton:[166,228],getdegre:[238,6,71,52],c2_:223,setchainid:[121,71],oegetpdbatomnam:[72,38],setintdata:[20,6,119,65,124,12,127,71,131,16,190,18,209,138,23,80,28,143,86,151,238,42,166,246,172,54],nonconst:224,num:[81,155,174],setenergi:[204,20,151,18,124,54,12,23,71],miscompil:208,respons:38,fail:[230,208,231,232,233,98,141,24,161,224,38],oechemgetplatform:[72,38],oeplatform:[120,71,72,100,133,257,208,137,167,222,224,230,231,232,233,214,10,242,47,169,210,174,220],best:[208,231,141,66,128,167,222],subject:213,rad2deg:14,said:66,oeiflavor_pdb_default:161,co6:141,databas:[17,173,135,208,38,161,167,222],delphi:[232,215,159,38,105],mutual:[167,66],c2c:66,figur:[45,116,208,235,66,219,13,129,167],c2a:223,oehasexplicithydrogen:[72,38],simplest:[45,129,63],isrotor:[127,119,38,71,186],drawn:116,awai:45,previous:[116,230,208,231,232,233,98,141,66,161,129,222,224],approach:[135,17],attribut:[235,98],coords2d:96,accord:[116,38,161],oepdbdatapair:[38,222],omg:[1,208],extend:[0,208,233,120,38,129,222,66],oemediumblu:180,ringatomsandbond:[49,249],xrang:[140,129,167,63],oeassignpaulingvdwradii:[238,72,159,38,232],oegeom3dgetcenterandext:[72,230,3],extens:[45,0,100,2,72,230,208,231,232,233,178,161,128,129],extent:[128,230,3,174],upfront:141,natur:[17,173,238,38,167,224],carbon:[116,178,66,219,241,13,58,224],oeformat_mopac:[161,130],bondord:[49,215,77],oereadoldstylegrid:[72,174],oenotdelet:[244,182],oeoflavor_mopac:161,oeout:[210,233,174],protect:[116,167,222,224],accident:[232,98],easi:[100,167,222,63],c24:223,met:1,fault:[100,63,230,231,232,98,140],howev:[45,0,100,167,173,63,116,135,257,178,247,141,66,161,140,128,129,58,130,224],coz:141,oeprotectedbuff:[72,100,166,239],coc:[66,130],logic:[72,2,170,208,231,232,128],oegeomnormalizequaternion:[72,3],countri:213,cok:141,unk:[1,224],unl:[1,208],crystallograph:38,s_oxide_plu:109,assur:[128,38],ethanol:170,bool:[4,5,7,8,9,10,12,16,18,19,20,21,22,23,26,27,28,29,30,32,36,38,42,44,47,50,52,53,54,56,59,116,64,65,183,68,69,70,71,73,87,186,6,236,79,80,81,84,86,74,88,89,91,93,94,256,97,158,155,100,102,181,107,111,112,114,115,156,172,118,119,120,121,122,123,124,127,128,131,133,134,137,138,149,143,144,145,151,258,153,252,157,160,161,164,165,166,37,40,174,177,178,103,182,184,185,187,189,190,192,179,197,198,199,200,216,204,206,209,211,217,220,224,225,227,228,232,233,234,214,237,238,239,240,242,244,246,248,251,226,255],ccc2:66,had:[230,231,233],oecoordarrai:[72,141,71,168],boron:[58,232],gettitlesepar:[208,71,32],"2nd":128,heirarchi:63,permut:232,oemdlstereofrompar:[72,38,233,98],dens:140,settag:[71,92],wider:[222,178],oegetbondivdwradiu:[72,159,38],oegeom3ddotprod:[72,3],guid:135,assum:[247,63,213,135,232,120,35,38,128,140,13,58,224],rmsdarrai:[38,233],duplic:[128,208,66,98],accustom:45,oegetproteintorsionnam:[72,120],recur:233,getcent:[166,42,86],clearflag:38,sulfit:208,three:[45,0,100,2,63,116,208,231,232,98,235,141,66,13,219,129,58,222,224],been:[0,100,116,135,230,208,231,232,233,98,247,141,66,128,219,129,167,221,222,38,24],ting:17,isphosphoru:[238,6,71],sbuffer:187,much:[58,173,135,208,178,161,167,222],atomb:219,oebinaryfunct:[72,166,258,7,91,53,122,227,248],fredgrid:60,hesit:45,life:222,nopar:105,deeper:45,getval:[238,6,71,52],directli:[45,116,100,135,230,208,233,178,247,141,66,161,13],suppress:[116,231,232,38,13,83],worker:167,uncommon:45,ani:[116,2,63,66,128,129,130,100,213,141,140,161,167,222,224,230,231,232,233,98,38,13,158,45,173,178],lift:141,adddata:[20,6,119,65,124,12,127,71,131,16,190,18,209,138,23,80,28,143,86,151,238,42,166,246,172,54,141],input:[116,2,63,128,129,130,72,100,204,208,141,140,161,167,224,230,231,232,233,178,235,38,219,13,45,173],oeassignaromaticflag:[45,72,100,173,116,208,38,161,129,83,130],oemagenta:180,oegetsmallestsubtre:[72,38,98],emploi:66,oeissametypetest:[72,174],ident:[116,100,0,205,230,208,247,141,38,128,129,167,66],aix:[213,208],gnu:232,setexpr:[127,231,6,71,44],properti:[116,128,130,72,17,186,135,208,140,161,83,232,233,178,235,238,38,13,204,170,52,247,159],oecalculatemolecularweight:[72,159,38],counterclockwis:219,iscarbon:[238,6,71],buildexpress:[20,230,232,54,66,71],calcium:58,calcul:[72,17,116,247,230,231,232,238,141,38,140,159,222,224],pairwis:[116,100,66,222],publicli:[4,5,7,8,9,10,11,12,16,234,19,21,23,28,29,30,36,42,45,47,50,53,54,56,59,64,65,183,69,70,73,212,6,236,79,80,81,200,86,74,91,93,97,158,99,102,181,107,108,250,111,112,114,115,172,118,119,122,124,126,127,128,131,132,134,137,138,143,144,145,258,153,155,157,160,164,165,37,147,84,103,184,185,187,189,192,179,197,198,201,190,251,207,209,225,256,98,214,237,238,244,240,248,226],aid:[129,17,232],gave:100,getformat:[47,87,10,214,160,161,13,137,130,71],spawn:167,seven:231,pyramid:219,istru:[244,182],oearomodelmmff:[193,215,105,130],oereadmolecul:[45,72,100,161,204,38,128,13,129,167,130],tabl:[0,2,128,130,72,17,204,208,141,161,167,222,224,230,231,232,233,98,235,159,219,178,45,170,247,58],toolkit:[72,100,116,230,208,232,141,128,83,224],examplesoebio:72,getendidx:[127,119,186,71],conf:[128,89,46,38],allen:[100,257],oesmilesflag_bondstereo:83,getzdim:[131,16,63,209,166,65,138,80,28,143],jochum:17,getorderprior:[68,166,211,197],sever:[45,0,100,17,208,231,232,235,141,38,128,159,13,66],precis:[128,100,224,174],disabl:232,sweepconf:[18,231,124,140,128,71],jame:17,perform:[45,0,63,116,135,230,208,231,232,233,98,159,66,161,140,13,167],"1usn":222,make:[116,100,63,173,204,230,231,232,178,141,24,161,128,167,224],format:[116,63,10,128,130,72,100,17,204,208,137,140,161,167,222,224,87,230,231,232,233,98,235,38,13,45,47,214,247,174,220,58],bitmask:[161,222],oeistream_dealloc_t:133,setresiduenumb:[121,71],writer:[45,230,208,231,232,233,222,140,161,130,224],renumb:231,canext:223,gridobject:174,allmask:[215,105],lithium:58,oedefaultimplicithcount:[72,38],pyatompred:232,complet:[45,116,161,230,232,178,141,66,128,13],seqalign:222,fragil:[45,224],oetripostypeel:[72,38],mtrix1:100,evil:140,hand:[45,0,116,174,38,161,219],fuse:[129,66],idea:161,ownership:45,refin:100,n20:223,tune:45,numconf:[128,124,71,18],kept:[100,167,173],oecopycrystalsymmetri:[72,120],thu:[45,116,100,38,161,140,128,224],getbyt:[185,187,242,192,137,30,234,71],thr:1,inherit:[4,5,7,8,9,10,11,12,16,19,21,23,28,29,30,36,42,45,47,50,53,54,56,59,64,65,183,69,70,73,212,6,236,79,80,81,200,86,74,91,93,97,158,99,102,181,107,108,250,111,112,114,115,172,118,119,122,124,126,127,128,131,132,134,137,138,143,144,145,258,153,155,157,160,164,165,37,147,84,103,184,185,187,189,192,179,197,198,201,190,251,207,209,225,256,234,214,237,238,244,240,248,226],contact:[45,58],thi:[0,1,2,4,5,6,7,8,9,10,11,12,13,14,15,16,256,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,62,63,64,65,66,67,68,69,70,72,73,87,75,76,77,236,79,80,81,82,83,84,85,86,74,88,89,90,91,92,93,94,96,97,98,99,100,101,102,103,104,105,106,107,108,109,250,111,112,113,114,115,116,117,118,119,121,122,123,124,125,126,127,128,129,130,131,132,95,134,135,136,137,138,139,140,141,143,144,145,146,147,148,149,150,151,152,153,154,155,156,157,158,159,160,161,162,163,164,165,167,168,170,171,172,173,174,175,177,178,179,180,181,182,183,184,185,186,187,188,189,190,191,192,193,194,195,196,197,198,199,200,201,202,203,204,205,206,207,208,209,210,211,212,213,214,215,216,217,218,219,220,222,223,224,225,226,227,228,229,230,231,232,233,234,235,237,238,239,240,243,244,245,246,247,248,249,251,252,253,254,255,257,258],conflict:[100,141,222,233,232],gzip:[161,100,233,214],programm:[45,116,17,135,178,241,161,167],everyth:45,portabl:[83,233],alternateloc:196,oeoflavor:[72,105,78,161],clearmolbas:[124,71,18],left:[116,232,39,219,129,58],getinvers:[132,46,207,89,11,71],identifi:[72,100,204,173,116,170,257,232,66,140,129,230],setcolor:[166,42,86],just:[0,100,230,232,233,24,128,140,219,83,38],oearotyp:[72,109,78],mopac:[105,78,215,218,161,222,224],mid:[45,63],via:[45,173,247,230,98,141,161,128],hydrogenindex:116,resetperceiv:[20,151,18,124,54,12,23,71],jauffret:17,yet:[45,178],languag:[116,17,170,208,159,2],atomicnumb:77,asinex:222,oedetermineconnect:[72,230,231,232,235,38],getbfactor:[121,71],expos:[45,231,233],interfer:161,conjug:[247,58,130,208],iszmidset:[131,16,209,166,138,28,143],oehasresiduenumb:[244,72,241,71,81,182],oehasdoublebond:[72,38],ccc1ccc:66,defaultbond:[77,66],oegridfiletyp:[72,176,202],els:[173,159,66,161,219,129],partialcharg:[49,249],formal:[116,72,247,208,52,66,13,58,222],c2_minu:109,oeend:[72,133],bnd:38,opt:[13,38,116],applic:[100,135,224,208,232,230,247,24,167,222,66],mayb:[45,154],preserv:[72,173,222,230,208,231,232,98,161,128,167,130],setmapidx:[238,116,6,71,52],discrep:100,setrxn:[204,20,151,18,124,54,12,23,71],makealpha:222,set3d:38,fusion:[129,231],linearli:[231,63],ye1:141,eqchalogen:77,oeabsoluteconftest:[72,225,40,71,128],chemic:[45,116,17,173,213,135,170,159,38,2,129,83],ineffici:232,apart:235,oegetoebreturnstr:[72,174],measur:128,vdw:[141,38],specif:[45,0,100,116,135,222,208,238,98,170,141,38,161,241,159,167,130,224],arbitrari:[45,100,158,2,63,170,231,233,174,235,38,128,129,167],eqketonesulfoneroot:77,manual:[45,116,100,173,72,135,208,213,38,128,241,219,129,130],oetripostypeindex:[72,38],oegeomquaternionmultipli:[72,232,3],own:[0,100,230,137,214,178,220,128,167,222,224],singl:[0,2,116,66,128,100,135,208,137,141,24,167,224,230,231,232,233,98,235,238,13,45,49,247,58],oethrow:[140,161,180,173],oecount:[72,100,38],n_oxide_plu:109,unnecessari:233,oeolivegreen:180,underli:[140,63],oxid:[116,208],coords3d:96,old:[161,208,231,232,233],deal:[159,128,167,141,233],mol2h:[218,215,105,78],oxim:[208,222],somehow:140,percentag:208,resolv:[208,98],born:17,setfloatdata:[20,6,119,65,124,12,127,71,131,16,190,18,209,138,23,80,28,143,86,151,238,42,166,246,172,54],oemutex:[72,100,95,208,232,233,67,242],acetonitril:224,aalten:17,amap:195,successfulli:66,oepredit:26,constfcn:[182,227],insensit:[208,231],cooper:17,implement:[45,0,100,167,2,116,247,230,208,231,232,233,178,141,66,128,17,58,224],bottom:116,icc:233,balducci:[129,17],flush:[73,214,181,21,242,134,29,71],oestreammanag:233,subclass:128,oelightblu:180,hasunitcel:[65,166],equal:[17,247,141,38,140,2,129,66],oegettriplebondneighbor:[72,38],gridplu:101,condit:[167,58,66,213],blosum62:[205,222],foo:[208,222],oegridgetplatform:[72,174],oegridabstractbas:[72,16,246,131,209,166,174,65,138,80,28,143],oedefault:[85,243,20,151,18,38,162],clearbas:[124,71,18],atomstereo:[249,83,105],plu:[235,159],sensibl:257,uncompress:[100,20,151,230,18,124,54,12,140,23,167,71],oeisstream:[72,100,187,88,192,233,242],getexplicitdegre:[238,6,71,52,98],oeannotatesymbol:[72,174],oecalloncefunc:133,nraromsystem:129,unboundedcach:[15,167],unreason:235,oetransl:[72,46,207,174,38,128,71],gettargetbond:[71,9,254],post:224,"super":238,describ:[45,0,167,247,173,116,170,231,178,235,241,13,58],chapter:[45,116,100,173,63,204,135,52,178,235,170,128,129,167,130],suppressexplicith:125,obj:[239,216],would:[45,0,100,173,116,135,230,208,232,233,98,141,24,178,161,128,129,167,222,66],movemol:231,steadili:167,oereadrxnfil:[72,231,38,233],pdb1a28:222,slightli:[128,2,173],biopolym:[208,222],cdx:[208,105,78,232,215,141,233,218,161,224],unfortun:[247,0,232,38,222],canonic:[100,17,170,232,38,83,222],zcoordsort:148,closefd:[21,234],oemdlparitytag:[72,38],commit:[213,224],retainstereo:[38,222],produc:[116,100,0,208,232,213,38,13,130],oegetspacegroup:[72,120],oechemtk:72,oegridislicens:[72,174],oegetformatextens:[72,38,232],oegeom3ddist:[72,3],xyz:[42,86,20,151,105,78,174,34,218,215,3,140,161,58],"float":[187,188,63,20,191,172,120,121,124,11,12,199,128,131,16,133,190,204,18,207,209,23,80,140,28,143,224,86,151,89,132,233,232,255,238,38,42,65,46,246,247,181,174,117],numbond:[204,20,151,18,254,9,124,54,66,12,23,71],bound:[72,63,66,128,167,222,224],ismemb:[244,182],down:[17,194,66,219,2,129,167,222],lewi:17,right:[219,213,39,116],wrap:[45,100,231,232,233],pl3:224,automorphatom:77,storag:141,mass:[100,2,230,208,77,232,52,159,38,238,83,222,66],stereocent:[141,83],often:[45,0,100,167,186,52,178,38,161,128,129,58,222],accordingli:[100,38],oeattachdata:[72,174],guthri:17,suffici:[219,100,58,167],pubchem:232,clearvalu:[68,166,197],bioinformat:222,support:[0,63,116,128,72,100,208,213,141,140,161,167,222,224,232,233,98,38,219,13,178,45],oeformat_bin:161,transform:[116,132,46,170,207,89,231,11,12,71],"00cc":0,oeisphosphoru:[244,72,145,71,241,182],avail:[45,100,2,230,231,232,98,235,141,66,159,129,167,130],width:[232,42,86,174,98],reli:[167,232],joseph:17,oegaussianbas:[72,166,86,246,190,172,174,42],cansmi:[255,130],fraction:[100,208,66],oe2:223,overhead:[167,232],setrangeon:[166,233,228],clemen:17,war:213,analysi:[45,167,17,222],subtend:208,hemispheredirect:174,usingperiodictablefunct:159,form:[116,100,173,72,170,208,231,232,233,235,213,238,38,219,129,130],offer:[167,178],c5_:223,degener:233,phenyl:208,maxim:[100,17,135,232,66,167],isupp:232,so2:[1,136],oeannotatelin:[72,174],catalyst:253,heap:257,setdim:[65,143,16,209,166],safeguard:224,"true":[116,156,7,120,65,179,66,128,129,69,100,154,208,211,137,213,22,141,219,167,192,225,32,89,232,233,227,214,238,38,13,174,177,182],never:[100,231,98,140,128,167],reset:[173,192,233,98,161,242,224],absent:[116,130],insidi:140,getpatternbond:[71,9,254],inquir:0,c2cocc2c3cncnc3:130,hetatom:[196,224],oehasidx:[244,72,158,182,71],until:[116,100,141,66],crystal:[17,222],absenc:13,fundament:[135,63],c5m:223,unrel:0,timev:133,emit:230,penal:66,classid:[68,166,211,197],classif:17,featur:[72,100,161,173,116,257,208,231,232,233,174,230,141,66,128,13,224,222,38,24],ishydrogen:[238,6,71],getgaussian:[172,166,190],"abstract":[45,72,17,173,135,178,66,161,128,167],toctre:72,oehasatomnam:[244,72,115,71,241,182],arbitrarili:[116,129,167,231,63],getstereo:[186,6,119,232,52,231,238,127,219,71],exist:[45,0,100,240,227,208,232,147,235,184,141,66,140,161,129,167,222,182],glanc:116,getmolbas:[71,137],isaromat:[186,6,119,52,238,127,130,71],oemempoolmode_unboundedcach:167,check:[100,63,173,230,231,232,233,98,235,141,38,128,222,224],inde:[45,116,129,83],"_baseimpl":231,setconftest:[128,167,71,137],oehasimplicithydrogen:[72,38],oesmilesflag:[72,83,38,78],when:[0,116,66,128,129,130,100,204,257,208,141,24,140,161,167,83,224,230,231,232,233,98,238,38,219,13,45,173,247,58],getnumgrid:[138,166,209],getstr:[233,214,47,71],elementtospatialcoord:[131,16,209,166,65,138,28,143],tin:224,role:[0,222,52,116],pictori:219,test:[100,17,161,135,231,232,233,98,24,219,128,129,158],tie:[231,66,233],sorteditercriterion:[227,53],node:[45,66],gridminu:101,conect:224,unrestrain:66,oeclearresidu:[72,38],automorphbond:77,mol1:38,mol2:[100,233,230,208,231,105,78,215,38,161,218,128,167,222],oesetrotam:[72,120],specificmask:[215,105],ccat:136,oecanonicalorderatom:[72,38,98],generatestructur:161,intent:140,adjac:63,consid:[45,0,100,2,173,72,170,208,231,140,235,38,13,116,219,129,167,66],addgaussian:[172,166,190],idx2:55,idx1:55,omega:[76,222],oenearestnbrsmethod:[117,72,148,38,78],longev:45,ixdim:[16,209],setmid:[16,209,166,65,143,222],longer:[116,100,173,247,257,208,232,233,98],furthermor:[100,38,129],istitleset:[131,16,209,166,65,138,28,143],ornithin:208,oegeom2ddist:[72,3],umr:116,pseudo:100,oeiflavor_generic_oearomodelmdl:[13,130],smimask:105,oereadmacromodelfil:[72,231,38,161],formalcrg:[215,105],ignor:[100,170,208,232,174,141,66,222],getstartingmateri:[71,32],time:[45,116,100,173,135,257,232,98,38,161,129,167,83,230,66],push:[166,230,233,26,27,128,224],getcount:[166,25],targ:43,oegreen:180,atommatch:[71,217],oeunimolecularrxn:[72,156,208,233,116,71],"1ccccc":0,concept:[45,161,167],oeiswriteablegrid:[72,174],chain:[249,161,241,13,129,222,224],roo:[129,17],skip:[185,187,242,192,233,137,30,161,234,71,224],global:[45,100,167,204],pushact:[124,71,18],getaxi:[238,6],villa:17,oebondstereo:[165,146,72,119,78,219],rot:[38,233,120],oefilecr:[72,230,133],row:[46,232],ci9603487:17,decid:[167,24,208],middl:231,depend:[116,2,159,38,219,129,167,130,224],system:[116,2,66,129,130,15,72,100,17,135,208,213,161,167,83,222,232,38,13,173,247,58],nonconsta:27,recognit:[100,17,224],formic:100,graph:[45,17,170,230,231,232,233,66,128,2,129],oeqbas:[72,6,231,127,71,44],odonnel:17,oegetipaddress:[72,100,133],heavyonli:38,oeor:[244,72,166,231,232,64,182],vec:[207,132,3],getparamet:[166,230,211],ccdc:38,oemolothread:[72,100,47,87,38,160,167,71],oeparsecommandlin:[72,257,141,174],oewritemacromodelfil:[161,72,231,38,98],oelingotyp:255,sourc:[116,230,208,222,224],string:[120,0,186,187,20,192,119,10,65,124,66,12,68,174,130,72,16,133,73,98,18,232,257,208,209,211,137,21,214,23,149,80,116,28,167,83,224,255,87,228,151,230,231,100,233,234,235,238,38,160,161,13,92,47,45,121,246,173,94,170,143,181,52,204,220,141],oenewmolbas:[45,72,38],oeischiralatom:[244,72,241,71,56,219,182],oedealloc:[72,133],oemolostream:[72,47,87,231,232,233,98,214,66,161,128,167,130,71,38],"1cccc1":0,newbond:[204,20,151,18,124,54,12,23,71],broadli:129,oelightpurpl:180,getflavor:[47,87,10,214,160,161,13,137,130,71],getmcmolbas:[71,137],mollist:161,exact:[17,178],hasstereospecifi:[186,6,119,52,231,238,127,219,71],seealso:[45,128,140,66,130],dim:[124,89,46,63,12],hollidai:17,breadth:17,level:[45,116,100,94,222,224,208,231,232,174,230,235,141,38,220,161,129,167,130,66],did:[161,208],oegridgetarch:[72,174],dig:45,iter:[45,72,17,63,116,230,233,98,66,178,27,128,167,222],magnet:213,item:[230,167,233,178],oetriposresonanttypenam:[72,38],oeannotatetext:[72,174],quick:[135,100,17],oebitvectorxor:[72,174],oebas:[63,20,209,119,65,124,12,127,147,72,16,190,18,208,6,138,23,80,28,143,222,86,131,151,231,233,238,38,42,45,166,246,49,172,174,54,141],round:[128,141,66,224],dir:[88,214],lloyd:[17,130],oeiflavor_skc:161,getinsertcod:[121,71],slower:[167,208],oeminimol:[243,222,233,98],oestringtokenizequot:[72,232,174],htm:167,c_exo:109,oehasatomicnum:[244,72,19,178,71,241,182],cost:[116,167,141,63],oeconfbas:[45,128,158,208,18],setorderprior:[68,166,211,197],sayl:17,closurebond:49,oenumbertostr:[72,174],oemediumorang:180,appear:[45,116,2,230,208,233,161,219],strictformalcharg:77,"64bit":222,hse:1,atomtypeint:49,oebinaryor:[72,166,248,231,227,53],mchg:105,current:[100,173,135,231,232,178,247,141,38,128,219,58,83],sinc:[45,116,100,161,63,135,208,128,170,159,66,219,13,167,130],addalia:[68,166,197],u33:38,oecompressionavail:[72,133],oehead:[246,38],oeannotatesplinesurfac:[72,174],c160040a013:17,ground:213,oeatomisinresidu:[244,72,71,226,241,182],xplor:[202,63],oecent:[72,38,128],deriv:[116,187,63,119,195,128,68,129,131,16,134,190,138,208,21,23,80,28,30,244,86,87,88,26,231,254,234,94,238,38,160,240,227,44,45,46,246,181,40,53,57,182],gener:[116,2,63,66,128,130,72,100,17,208,78,215,141,161,167,83,224,230,231,232,233,178,235,38,13,45,173,170,105],coeffici:38,addillegalvalu:[68,166,197],"1ta6":231,oegeom3dquaterniontorotmatrix:[72,257,232,3],water:[128,204,224],pdbatomidx:[35,31,51,36,48],azobenzen:100,modif:[100,208,233,224],address:[135,100,208,98],oegeom2dangl:[72,3],oemolstreambas:[72,174,47,87,10,214,38,160,161,137,71],hatom:38,wait:[106,242],box:[128,171,208,232],signific:[0,100,135,208,233,98,66,167,222,224],oeminibond:[222,98],oegetatomcom:[72,231,38],adjusthcount:38,quaternion:[232,3],splineresolut:174,tindex:13,oenot:[244,72,166,232,111,182],renzo:17,oehassinglebond:[72,38],extrem:208,oeaddexplicithydrogen:[72,247,232,233,38,128,13],commonli:[219,38,173,222],macintosh:213,orient:[45,178],dioxid:224,semant:[45,0,2,116,232,141],regardless:[140,233],oeisomericconftest:[72,40,98,128,69,71],extra:233,eqaromat:[77,66],tweak:[100,230,208,231,233,98,141,24,161],modul:135,c4_:223,prefer:[116,230,208,38,161,167],oeqmol:[45,72,100,20,151,18,233,38,116,13,71,66],oedeleteptr:[72,133],cn1ccc:173,hasalphabetaunsat:[238,6],settitlesepar:[116,208,71,32],"1st":128,marker:133,oewriteinterfaceconfigurationfil:[72,174],should:[45,116,100,167,241,161,213,135,208,232,235,247,141,38,128,140,13,129,58,83,224],ethanamin:116,wang:[17,66],cyanamid:224,infinitum:116,memori:[45,72,100,63,116,135,257,208,232,233,178,230,161,167,222,224],pred:[27,151,20,18],thrd:167,oeatomisinr:[244,72,71,241,129,70,182],visit:[49,116,66,140],getstringdefault:[68,166,197],prec:174,prevbit:[166,233,228],phi:[76,63,3,222],percept:[72,100,186,17,204,173,233,222,208,232,52,98,161,235,141,38,219,13,129,130,224],handler:[224,222,233,174],oeisgzip:[72,38],criteria:[128,66],msg:[220,94,166],scope:[45,100,178],mse:[1,232],prev:178,"1o3m":231,reorder:[140,100,208,230,232],"1o3n":231,m2g:[1,208],plug:167,capit:231,c1cc:[0,66,173],kei:[133,167,38,173],appendic:72,peopl:224,bondopt:[54,20],ctype:232,enhanc:[17,208,231,232,233,98],heteroatom:224,visual:63,oeexpandcrystalsymmetri:[72,120],templat:[184,0,4,20,132,236,64,122,124,11,12,128,174,216,131,16,133,240,18,207,208,209,211,147,138,26,27,167,224,153,150,151,152,230,89,90,91,233,227,258,239,3,97,158,244,246,248,53,231,111,212,182,197],oereadfastafil:[72,38,161],c3_minu:109,oegeom3dsubtract:[72,3],oeelemno_maxelem:38,altern:[45,116,100,230,208,231,232,141,128,13,129,167,222,224],effort:[128,167,232,178],cn3:130,fly:128,graphic:208,seek_dir:[88,214],ibm:[213,208],oeerrorlevel:[72,176,82,174],car:136,prepar:247,pretend:140,oesmilesflag_atomstereo:83,uniqu:[45,72,17,173,116,135,230,208,231,232,170,38,140,129,58,83,66],nc2c1c:66,igrid:[138,209],descriptor:[230,17,233],oeunlinkdirectori:[72,133],oemakefp:[72,174],can:[116,2,63,66,128,129,130,100,135,208,78,215,141,140,219,167,83,222,230,231,232,233,178,235,159,38,161,241,13,45,173,170,105,247,218,238],www:[116,167,0,170,38,13,58],tabul:38,examplesoechem:72,webster:17,purpos:[116,213,38,128,58,222],oelingosimimpl:255,materi:[72,213,116],eps0:75,problemat:230,getyinc:[131,16,209,166,138,28,143],heart:45,isomer:[100,173,170,230,208,231,98,141,38,161,128,83,222],oeconcatit:[230,233,26],stream:[72,100,167,134,185,231,233,242,161,128,29,222,30,224],predict:[58,17,38],setkeyless:[68,166,197],backslash:[230,208],agent:253,oeisstandardproteinresidu:[72,120],topic:135,konrad:17,addstringvalu:[68,166,197],ter:[161,215,105],oeoflavor_pdb:161,isdelet:[20,151,119,18,6,233,124,23,12,127,54,71,238],hydrogen:[0,2,116,66,128,72,100,204,257,208,141,161,83,222,224,230,231,232,233,98,96,219,241,13,178,170,105,52,247,58,38],occur:[116,100,257,208,233,238,38,128,167,224],midx:[65,143,16,209],occup:98,alwai:[116,100,170,208,231,233,66,219,58,83],oehaspdbdata:[72,38],openinput:233,multipl:[45,116,100,161,173,230,208,128,232,98,235,141,66,219,140,13,167,222,224],oemmff94initialcharg:[72,100,38],resetconf:[124,71,18],oevectorbind:[233,72,38,71,252],gettransl:[207,71],oegridgetvers:[72,174],getchain:[35,61],write:[63,66,128,130,71,72,100,73,204,135,257,208,21,141,24,161,167,83,222,230,231,232,233,98,235,38,134,242,45,29,186,173,214,181,52],heterocycl:[13,100],nextbit:[166,233,228],actual:[45,0,100,63,135,208,178,24,38],pure:[128,161],discov:38,getset:[166,197],ordin:[100,135,230,208,231,232,98,235,24],c3cccc4c3cccc4:129,valueanddefaultbinarys:[68,166,197],rmat:[132,207,89,11,3],map:[0,100,63,72,233,232,52,241,66,116,13,129,83,38],product:[116,100,253,0,72,208,213,3],oeoflavor_mol2h:161,mat:11,oegeom3dcopi:[72,3],chi2:76,max:[187,63,76,233,137,38,82,128,167,163],sp2:[231,141,62],chi1:76,spot:167,chi4:76,chi5:76,membership:[72,2,186,52,235,66,129],oedarkmagenta:180,mai:[0,116,66,128,129,130,17,204,135,213,140,161,167,222,224,230,232,233,235,159,38,219,13,45,173,170,247,238,58],underscor:116,data:[116,63,128,72,100,135,257,208,215,141,140,161,167,222,224,230,231,233,178,160,219,241,45],recanonic:83,implicith:[215,159],masktyp:174,least:[135,13,58,66],inttyp:77,practic:[45,128,17,173,224],johnson:17,setvalencecorrect:[116,71,32],"6th":13,parameter:100,setinttyp:[186,6,119,52,98,238,127,71],explicit:[116,2,128,72,100,257,208,141,161,83,224,230,231,232,98,235,38,241,13,178,52,58],oereadgrid:[72,100,174],getserialnumb:[121,71],inform:[116,2,66,128,129,130,100,17,204,135,208,213,140,219,83,222,224,230,231,232,98,235,38,13,173,170],"switch":[100,141],oesettors:[72,120,38,98],combin:[116,100,170,141,38,128,167,83,222,224],oegeom3dadd:[72,3],oegeom3dsetlength:[72,3],cylind:171,callabl:232,bunk:[17,66],p_pyrol:109,prefactor:[42,86,174],oestringsimplifywhitespac:[72,174],chi3:76,repair:247,getspacegroup:[65,166],soc:17,c1cn2ccnc2nc1o:116,oegetisotopicweight:[72,230,159,38,222],hoh:1,nitrogen:[116,100,170,233,247,38,241,58,222,66],size_t:[133,68,167,230,126],equip:213,still:[45,72,204,63,116,135,230,208,232,52,24,128,219,167,233],pointer:[45,72,63,230,208,231,233,98,141,219,178],oebinarywrit:[72,161,174],cyclohexan:38,oefileiswrit:[72,133],group:[45,116,100,17,230,170,257,208,231,232,65,213,66,241,222],eser:129,basicmask:[215,105],oeregisteristream:[72,133],getwidth:[172,166,42,86,190],platform:[100,230,208,233,98,222,257],window:[100,208,232,233,213,141,222,224],oegeom3dnorm:[72,3],oegrid:[72,16,246,63,131,100,166,80,28,143,222],oesmilesatomcount:[72,257,38],main:[257,167,141,222],basenam:230,oehierchainimpl:51,setdoubledata:[20,6,119,65,124,12,127,71,131,16,190,18,209,138,23,80,28,143,86,151,238,42,166,246,172,54],within:[0,100,135,232,235,38,161,128,224,66],synopsi:0,oecloseostream:[72,133],setmaxmatch:[208,22,66,217,71,177],popact:[124,71,18],encod:[100,17,204,135,170,219],rewind:[187,137,73,185,88,192,231,234,21,30,242,134,29,181,71],initi:[116,100,173,72,135,230,232,233,174,66,140,13,222,224],oehasord:[244,72,102,71,241,182],getsymmetryclass:[238,6,38,71],oeatomisinrings:[72,129,38],aesthet:208,therebi:[233,116,38,173,66],half:[208,2],oeiflavor_generic_default:161,firstbit:[166,233,228],oecolorset:[72,174],oegethonigioniccavityradiu:[72,231,159,38],introduct:[135,72,17,170,173],term:[129,38,233],ishalogen:[238,6,71],dflt:197,oeisnan:[72,133,233],incrementreadfailurect:[71,137],ask:[100,167,231],oeqmoltyp:[45,72,20,85,78,38],xlc:208,addbond:[238,6,71,12],alter:[13,167,66,204,116],separ:[45,0,100,173,116,208,232,233,24,128,129,167,66],oegethostid:[72,100,133],exampl:[0,2,63,116,66,128,129,130,72,100,135,208,141,140,219,167,83,222,224,231,232,98,235,159,38,161,241,13,178,45,173,170,174,247,58],o5_:223,setstringdata:[20,6,119,65,124,12,127,71,131,16,190,18,209,138,23,80,28,143,86,151,238,42,166,246,172,54],oesourc:159,setrxnrol:[238,6,71,52],polit:231,oeiscarbon:[244,72,71,241,182,59],localhash:148,replac:[167,232,233],arg2:[122,248,227,91,53],gaussian:[101,63,174],oegridtyp:[60,176,72],ringmemb:77,oeformat_rdf:161,oecopybit:[72,174],getnextmol:[71,137],significantli:[247,13,100,208],year:[129,222],recogn:[100,17,208,231,232,233,161,130],honig:17,oeapi:238,oegetcenterofmass:[72,208,38],shown:[116,173,128,66,219,13,167],maxtyp:[85,243,162,136,229,109],oeatomsetmdlpar:[72,230,38],maxformat:218,oedarkblu:180,space:[45,0,16,17,204,63,232,230,208,209,100,233,174,65,159,66,128,13,167,143],oematchpair:[72,150,20,254,9,22,54,66,217,71,177],profil:167,setstr:[214,71],compfcn:174,openey:[0,2,63,116,66,128,129,130,72,100,204,135,208,213,141,24,140,219,167,83,222,224,232,233,178,235,38,161,13,45,173,170,221,247,58],formula:161,oedisassembleexpress:[72,38,233],factori:[45,72,166,233,211],oeseqalignimpl:55,oetran:[72,18,89,124,12,71],earlier:135,plotkin:[129,17],oecontain:[246,38],migrat:128,oequaternion:[72,132,46,71],million:232,oewritepdbfil:[45,72,100,208,98,38,161],argv:[257,211,174,66,161,140,128,167],bookkeep:116,orn:[1,208],oedividegrid:[72,174],oewritehead:[72,38],getlevel:[220,94,166],benzoyl:116,shi:45,org:[167,17],"byte":[133,232,233],argc:[257,211,174],keith:17,oegeom3dmatrixinvert:[72,3],"_1ma":1,care:[13,167,178,128],reflect:[208,233,24,128,222,38],disclosur:213,kaufmann:17,wai:[45,0,161,63,178,213,141,66,128,140,13,129,167,222,224],unpair:0,prescrib:[135,58,38],oegetpdbdatapair:[72,38],nag:[1,208],synchron:[230,167,224],s_plu:109,recov:[128,230,167],turn:[45,116,233],oebfloatendian:[72,174],place:[116,100,135,230,208,231,98,247,128],u22:38,u23:38,tofirst:[27,166,178,26],oemdlqueryopts_addbondaliphaticconstraint:13,hydrogenmod:49,imposs:66,getoccup:[121,71],first:[116,66,128,129,100,17,204,208,141,24,140,161,222,224,230,231,232,233,98,235,219,178,45,247],origin:[45,0,63,173,116,230,208,231,233,98,141,128],fzfals:193,redhat:213,ringidx:129,onc:[116,135,208,66,128,129],arrai:[100,204,63,233,178,140,128,129],singlematch:[22,66,217,13,167,71,177],oemediumpurpl:180,wedg:[146,208,231,232,98,141,24,222,224],minimum:[58,66],stringtyp:77,getrotmatrix:[11,71],"long":[100,133,187,181,174,167,222],symmetri:[116,17,230,208,233,38,129,224],hasdata:[20,6,119,65,124,12,127,71,131,16,190,18,209,138,23,80,28,143,86,151,238,42,166,246,172,54],numatom:[204,173,20,151,18,254,9,124,54,66,12,140,23,71],ring:[0,2,116,66,129,130,72,100,17,186,208,215,141,222,224,230,231,232,233,98,235,38,241,13,49,105,52,247],fulleren:[100,208],open:[185,187,192,10,13,71,73,21,137,213,140,161,167,30,224,87,234,214,160,134,242,29,47,181],predefin:[128,178],getact:[124,71,18],unrecogn:[230,222,233,232],given:[116,173,63,72,170,257,238,232,98,235,159,38,140,128,129,230,224],from_el:38,oegetbondord:[72,100,38],silent:232,convent:[257,83],oegetgridformatextens:[72,174],lap:[191,166,188],oeformat_oeb:[161,130],oemolthreadbas:[72,47,87,10,160,71],uric:100,oeprocessfilenam:[72,133],hartzler:17,cumul:222,oeiflavor_sdf:161,averag:[230,159,38],circl:208,oebreaddata:[72,174],white:204,conveni:[0,100,173,116,247,222,208,232,178,141,66,161,159,128,158,130],friend:232,attach:[116,100,63,0,170,230,208,232,178,141,13,128,224],oepartpredt:[244,72,153,71,241,182],oewritefastafil:[72,38,161],setchir:[186,6,119,52,238,38,127,219,71],gettargetatom:[13,71,9,254],especi:[167,38],quat:[132,3],"public":[4,5,7,8,9,10,11,12,16,17,19,21,23,28,29,30,36,13,42,45,47,50,53,54,56,59,116,64,65,183,69,70,73,212,6,236,79,80,81,200,86,74,91,93,256,97,158,155,102,181,107,108,250,111,112,114,115,172,118,119,122,124,126,127,131,132,134,137,138,143,144,145,258,153,99,157,160,164,165,37,147,84,103,184,185,187,189,192,179,197,198,201,190,251,207,209,213,222,224,225,233,234,214,237,238,244,240,248,226],copi:[4,20,106,7,8,9,10,11,16,18,19,21,22,141,25,26,27,161,29,30,31,32,35,36,41,42,43,47,48,51,69,54,55,117,57,116,252,64,65,67,73,79,81,167,88,89,90,91,92,94,256,97,234,99,100,102,181,111,115,156,172,121,122,123,126,128,132,95,134,137,139,143,236,149,150,151,153,155,157,158,165,166,37,168,177,184,185,187,188,191,192,179,198,199,201,240,206,207,209,211,216,217,220,222,224,225,228,230,231,233,98,214,239,246,248,226,255],eqcpsacidroot:77,specifi:[0,116,66,128,100,208,141,161,167,83,222,224,230,232,233,235,238,38,219,241,13,45,170,247,58],ci00017a021:17,broadcast:[106,242],"short":[0,187,181,233,174,235,129],ci00009a001:17,oenbr:[117,41,38,71,72],necessarili:[24,38],getexplicitval:[238,6,71,52],than:[2,63,66,129,100,135,257,208,213,141,140,167,83,222,224,230,231,232,233,98,235,38,45],oesleep:[72,133],anum:38,serv:[116,222],wide:161,occ:170,sort_criterion:27,overlai:[231,38,233,120],oeulonglong:[133,174],c1ccnc:173,crossresolut:174,popbasedatatptr:[72,174],posix:100,oe3dtointernalstereo:[72,38],oemcmolbaset:[72,246,124,23,38,12,140,128,71],were:[45,116,100,173,230,208,231,232,233,98,141,24,128,140,13,167,224],posit:[116,100,2,222,178,219,130],satisfi:66,oemdlqueryopts_addbondtopologyconstraint:13,pdborder:104,seri:[116,222],pre:[141,66],ang:[38,3],oegetatomicnum:[72,159,38],sello:17,peekbyt:[185,187,242,192,137,30,234,71],pro:1,delim:38,argument:[116,2,66,128,129,130,100,204,257,161,167,222,230,231,232,233,98,159,219,241,178,45,173,238],oewritemolecul:[45,72,100,63,231,38,161,128,167,130,66],setstringvalu:[68,166,197],cc1ccn:66,oehybridization_unknown:238,writevalueanddefaultbinari:[68,166,197],sar:1,pushnextmol:[71,137],oesetdefaultiflavor:[72,38],saw:208,oebinarynot:[72,166,232,227,122,53],repeatedli:[161,233],dataptr:[131,16,209,211,174,143],bitwis:167,engin:17,squar:[38,63],alias:231,destroi:[116,173,204,178,140,128],moreov:38,note:[116,2,63,66,128,72,100,17,204,141,140,161,167,221,222,224,178,38,219,13,45,170,58],nextint:[199,100,166],ideal:[140,100,173],oehasstereohydrogen:[72,38,222],take:[0,116,66,128,129,130,100,204,257,208,141,161,167,222,230,231,233,178,159,241,45,173],combinemol:[164,225,74,40,69,71],oeexpropts_defaultatom:66,environ:[135,257,167,159],noth:[100,98],oehasmultiplebond:[72,38],isoxygen:[238,6,71],oesetdist:[72,230,38,233,222],oeroyalblu:180,sure:[161,141,63],importantli:100,reloc:100,trace:116,normal:[45,72,167,116,247,233,178,235,38,161,58,163],multipli:116,oegetprefactor:[72,174],compress:[72,100,89,20,151,257,18,230,124,54,12,161,140,23,167,222,71,224],setbigstep:[166,25],oecliquesearch:[72,231,66,71,177],exclus:[167,66],beta:[65,135,140,222,120],oesimplefactori:211,net:247,pair:[0,68,38,129,66],createcopi:[4,5,7,8,9,11,12,16,18,19,20,23,28,36,42,46,50,53,54,56,57,59,61,64,65,183,68,69,70,71,212,6,79,80,81,200,86,74,91,93,94,97,158,155,102,107,108,250,111,112,114,115,172,118,119,122,124,126,127,131,132,138,149,143,236,145,139,151,258,153,99,157,164,165,166,37,40,147,84,103,182,184,189,144,195,179,197,198,201,190,251,207,209,225,254,256,227,237,238,240,244,246,248,226],oeprimitive_it:[72,174],oemdlqueryopts_default:[13,116],sutton:[100,17],cuban:2,allevi:[45,257,167],synonym:[230,2],reshist:222,chodera:17,sala:17,later:[135,128,167,141,140],bywat:17,rashin:[159,231,17,38],mrr:141,quantiti:230,multiprocessor:257,runtim:232,pattern:[45,72,100,17,252,116,170,230,208,232,98,235,195,24,2,178,66],grididxtospatialcoord:[131,16,209,166,138,28,143],shortnam:120,prout:17,salt:[129,224],oeoflavor_smi_extbond:[230,222],gracefulli:224,notdelet:[244,182],chapter_coordin:204,cobra:0,oefiledelet:[72,133],addbondtopologyconstrain:13,newatom:[204,20,151,18,238,124,54,12,128,140,23,71],show:[116,167,173,222,128,232,178,235,159,66,219,13,58,130],xmol:161,"1cc1":0,borinin:232,atom:[140,0,208,2,115,63,5,117,144,120,179,66,12,126,128,129,70,116,198,72,100,17,189,204,135,19,20,130,141,24,79,81,219,167,83,222,200,145,151,231,230,183,232,233,98,93,235,36,237,159,38,161,241,13,178,45,155,37,186,173,170,103,224,50,157,52,107,247,84,226,56,238,256,58,112,59],se_plu:109,threadloc:[15,167],concurr:[167,232],permiss:[213,133],oedefaultmdlhcount:[72,38],threshold:[239,38,224],corner:[208,231],label:[116,38,252],line:[0,100,17,161,173,72,135,222,171,208,232,98,170,24,13,2,167,257,224],oemmfftypenam:[72,38],hist:38,onli:[0,116,66,128,130,72,100,186,208,213,140,161,167,221,222,224,230,231,232,233,178,235,159,219,13,45,170,52,247,58],explicitli:[204,63,247,231,128,232,161,235,38,219,13,129,167,130,224],slop:235,oeunarytobinaryor:[227,233,53],activ:[128,98],enough:63,helic:222,oehierchain:[35,61,51,72],baumer:[129,17],physiolog:58,helix:135,o4_:223,oeiswrit:[72,208,141,38],oedarksalmon:180,deletedatom:49,overwritten:[161,66],nearli:[45,167,141],variou:[116,0,208,178,235,66,13,130],get:[185,187,63,192,128,216,72,186,135,208,211,141,71,167,222,30,230,231,252,233,234,159,38,178,242,166,204,247,52,239],secondari:45,"2mc":208,cannot:66,nrproduct:116,oeformat_xyz:[161,130],progress:135,oebuildmdlqueryexpress:[116,13,38,72],requir:[116,63,66,128,68,129,100,135,208,141,161,167,222,224,230,231,232,233,235,238,38,219,45,173,247,174],getconftest:[71,137],spatialcoordtogrididx:[131,16,63,209,166,138,28,143],reveal:66,gethasdefault:[68,166,197],aluminum:[208,224],arginin:232,oeatomgetmdlpar:[72,230,38],c1co:130,c1cn:173,dramat:[232,224,167,208,222],yield:[116,167,66],oegeom3dvolum:[72,3],oefil:[230,133],oeassigndelphiradii:[238,72,159,38,232],twelv:66,roger:17,ce3:223,atomic2symbol:159,where:[72,100,63,116,135,222,208,231,232,233,98,141,66,128,13,129,167,130,224],ce2:223,incid:208,unfil:58,getpartialcharg:[63,247,6,52,238,71],symbol2atom:159,maximum:[72,17,204,208,38,128,129,167,66],hierarchi:45,ngrid:209,hetatm:230,lnc:17,concern:167,infinit:[45,116],detect:[116,208,233,66,13,129,222],ioutil:72,oecleartagdata:222,marsilli:247,review:[129,17],enumer:[0,58,66,116],mayor:24,pearlman:17,behind:45,oelightsalmon:180,settors:[71,12],between:[0,100,2,63,116,222,230,208,128,233,174,235,231,141,66,13,219,167,130,224],"import":[45,116,100,186,17,173,63,204,135,128,52,178,161,66,219,140,13,129,167,130],paramet:[116,100,63,247,257,208,224,233,230,141,38,13,167,222,66],across:[128,167,178],oeoflavor_smi:161,oefiledeterminenam:[72,230,133],assumpt:[13,58,167,232],oestringlow:[72,174],august:208,oeorang:180,marvin:0,oetripostypenam:[72,38],superatom:[83,105,233],currentpar:105,vriend:17,cycl:[72,100,208,66,129],sparc:[213,100],oeisalphacarbon:[244,72,61,103,182],coval:[235,159,38,224],getcoord:[166,190,204,63,20,151,172,18,124,54,12,140,23,71],oeget:232,oehasbondedresidu:[72,120],come:[128,233],vento:17,reaction:[0,100,17,204,72,170,208,231,52,141,233,116,83,222],repertoir:45,ncbi:232,oeischiralbond:[244,72,71,241,251,182],forerunn:129,comptitl:[225,69],pdb2f35:141,electroneg:[247,17],oeqatombas:[45,72,246,20,6,54,217,238,224,71,44],willett:17,oegeom3dmakequaternion:[72,3],j100272a006:17,tutori:170,oeexpropts_eqon:66,oemcmoltyp:[45,72,162,38,78],improv:[100,257,208,231,232,233,98,230,141,83,222,224],"7mg":208,fix:[100,257,208,231,232,233,98,230,141,24,222,224],getmapidx:[116,6,52,238,83,71],oeishalogen:[244,72,71,241,182,200],oegettoken:[72,38],orderatom:[204,20,151,232,230,18,105,178,124,54,12,140,23,71],p_plu:109,oebinari:[63,233,161,128,222,224],color:[42,86,149],overview:45,inspir:0,oeflush:[72,133],deduc:235,pon:17,hoard:167,setzmid:[143,16,209,166],oestringtransl:[72,174],typic:[58,204,247,238,38,161,167],inadvert:128,amino:[100,135,230,208,232,141],needlessli:232,oeformat:[218,72,78,161],fisanick:17,deletedata:[20,6,119,65,124,12,127,71,131,16,190,18,209,138,23,80,28,143,86,151,238,42,166,246,172,54],oeiter:[72,166,4,32,230,233,97,27,222,224],getxdim:[131,16,63,209,166,65,138,80,28,143],invert:[170,231,141,232],oegetthreadsaf:[72,174],invers:[170,100,89,159],mark:[173,230,208,231,232,98,13,167],oegetpackedcoord:[72,38],workshop:17,bigstep:25,endo:49,acrd:128,u11:38,barri:17,u13:38,u12:38,oeelemno_o:[128,159,38,204],oeelemno_n:159,schroding:213,bme:[1,100],thousand:[66,222],resolut:174,oeelemno_c:[159,38],andrew:17,pedretti:17,pdb2gce:141,setformat:[47,87,137,214,160,161,10,71],oeresiduehydrogen:[72,38,222],oeishydrogen:[244,72,189,71,241,182],univers:[170,17],repres:[0,2,4,5,106,7,8,9,10,11,12,16,18,19,20,21,22,23,25,26,27,28,29,30,31,32,35,36,38,40,41,42,43,44,45,46,47,48,50,51,52,53,54,55,117,57,59,116,252,64,65,66,67,68,69,70,73,87,186,212,6,236,79,80,81,84,86,74,88,89,90,91,92,93,94,97,227,99,214,102,181,107,108,250,111,112,114,115,156,56,118,119,121,122,123,124,126,127,128,131,132,95,134,135,137,138,139,143,144,145,149,150,151,152,153,155,157,159,160,161,164,165,37,168,170,172,173,147,177,103,182,183,184,185,187,188,189,190,191,192,195,179,197,198,199,200,201,204,206,207,208,209,211,213,216,217,220,225,228,231,232,256,234,235,237,238,239,240,241,244,246,247,248,251,226,254,255,258],oesubsearch:[72,100,230,98,38,217,13,167,71,66],oeostream:[187,72,133,73,47,214,88,222,181,231,120,230,21,242,220,134,29,174,71],allowreord:100,"case":[116,100,167,257,208,231,232,233,98,230,141,38,128,13,129,58,222,66],xplmap:63,setcoord:[204,20,151,18,124,54,12,128,23,71],kappa:174,sethetatom:[121,71],openfd:[21,242,234],assymetr:38,oegetwidth:[72,174],valeri:17,oegridgetreleas:[72,174],oeformat_cdx:[161,130],trick:167,cast:[233,182],invok:[58,38],oegridsetallel:[72,174],setstrict:[220,94,166],oearomodel:38,oeassignhonigioniccavityradii:[238,72,159,38,232],invoc:167,oesetpackedcoord:[72,38],queue:167,aluminium:208,wwpdb:[100,208],advantag:[45,0,167],wouldn:[231,98],o_plu:109,henc:[0,135,232,178,66,140,128,83],worri:[45,167],quiet:82,cluster:208,"default":[0,2,4,20,106,7,8,9,10,11,13,15,16,18,19,21,22,141,25,26,27,161,29,30,31,32,34,35,36,37,38,82,41,42,43,47,48,51,69,54,55,117,57,116,252,64,65,66,67,73,79,81,83,88,89,90,91,92,94,96,97,158,99,100,214,102,104,105,111,113,115,156,172,120,121,122,123,125,126,128,130,132,95,134,137,139,143,236,148,149,150,151,153,155,157,159,165,167,168,174,177,179,181,184,185,187,188,191,192,196,198,199,201,203,204,256,206,207,208,209,211,215,216,217,220,222,224,225,228,230,231,232,233,234,101,238,239,240,246,247,248,226,255],cmd:68,clutter:45,pthread:[100,208,233],mcgregor:[17,66],theta:3,protein:[17,135,230,232,161,129,58,222],oepurpl:180,helium:208,marsili:17,trival:170,oewritehtml:[72,174],pthrd:167,pat:174,atomopt:[54,20],author:141,oeisoxygen:[93,72,244,182,71],cc1:[0,130,173,116],same:[0,2,116,66,128,129,100,208,141,140,161,167,83,222,224,230,232,233,98,38,13,178,45,173,170,247],getistream:[71,10],oeterminalocount:[72,38],binari:[63,257,231,232,233,161,222,224],inconsist:[230,222],oeostream_alloc_t:133,holmium:[100,208],pah:208,document:[72,17,161,208,232,98,213,128,13,167],exhaust:[72,17,203,208,141,66],notroso:222,jorgensen:17,oeigzstream:[72,187,185,88,230,233,242,222,30],oegetresiduenam:[72,38],setend:[127,119,186,71],pushbasedatat:[72,174],oemaskgrid:[72,174],assist:17,ness:167,getxidx:[131,16,209,166,138,28,143],capabl:66,acetyl:[116,230],barnickel:17,xdim:[16,209,65,80,28,143],oebatominttypeopt:[72,38],mani:[45,116,167,161,173,135,232,178,241,141,38,128,140,13,129,58,222,66],extern:[231,0,83,17,232],ceh:100,oecreatedirectori:[72,133],tradition:[0,178],getidx:[116,186,119,6,52,178,140,159,66,12,219,127,13,129,158,130,71,238],oerenamefil:[72,133],oestream:[187,72,73,185,88,192,232,234,21,214,242,134,29,181,30],isotop:[0,170,49,230,208,238,105,52,232,135,141,38,159,224,83,96],appropri:[233,167,141,232,204],oeoflavor_mmod:161,tolast:[27,166,98,178,26],setformalcharg:[247,238,6,71,52],iupac:[257,208],oesystem_oethrow:230,clobber:89,non:[116,100,167,2,170,230,208,238,232,233,141,38,128,241,219,58,83,222,66],oeregisterostream:[72,133],ccl:66,cco:170,without:[45,100,58,63,213,135,230,208,231,233,98,235,141,38,161,128,167,222],"1ccc":0,oecorrectacidprotongeometri:[72,231,38],disassoci:58,getchainid:[121,61,51,71],v2000:141,"1co":130,dimension:[233,219,232,63],ccc:[116,130,173],abund:[238,208,159,38],execut:[13,167,116],among:129,oehierview:[35,61,224,72],oegeom3dabstors:[72,3],oedbmcmol:162,reindex:233,putbyt:[73,181,21,134,29,242],refactor:230,aspect:141,oebshortendian:[72,174],am1:141,flavor:[45,72,47,87,222,230,208,231,232,10,214,38,161,13,137,83,130,224],oemakeregulargrid:[72,174],speed:[100,63,208,232,98,141,66,224],orderbond:[204,20,151,18,6,124,23,12,238,54,71],oegeom2drot:[72,3],oerot:[72,174,38,128],death:213,struct:[114,189,5,144,118,183,67,251,133,70,200,145,152,93,237,41,50,107,84,56,112,59],getinttyp:[186,6,119,52,238,127,71],oeexpropts_eqhalogen:66,catom:140,"_extract":[207,132,11,71],oesmilesflag_default:38,except:[100,208,232,233,235,141,128,140,13,129,167],littl:[135,241,167],setvalu:[131,16,63,209,166,92,65,197,143,71,224],identif:[72,129,17],oegetgridfiletyp:[72,174],oeatomisinag:[244,182],hing:230,oeisterminalsulfur:[72,38],versa:219,oeannot:[208,246,174],getinterfac:[166,211,98],malcolm:17,loadvalu:[68,166,197],earli:247,oestopwatch:[72,100,166,188],psi:[76,222,3],around:[100,208,232,233,178,141,38,219,130,66],res2:38,res1:38,onlycalpha:120,period:[0,159,72],iquat:3,oesmilesflag_atommap:[230,83],grid:[72,100,63,230,233,174,141,222,224],"21a":0,zdim:[16,209,65,80,28,143],world:[135,140],psu:[1,208],saniti:98,reacnum:[116,32],oegeom3danglecoord:[72,3],ccn:116,oxygen:[204,247,257,208,38,241,128,58,66],ch4:[83,224],oereadmol2fil:[72,38,233,161],integ:[116,63,66,129,130,100,204,208,141,140,161,167,83,232,233,235,238,219,13,186,247,52,159],benefit:[45,140,167,232],oegetimplicithcount:[72,38],either:[0,116,231,230,128,232,233,98,235,141,66,13,219,222,38],output:[45,72,100,173,63,116,224,231,232,222,161,141,38,128,219,129,167,130,66],inter:[17,63,224],oehastoken:[72,38],fulfil:[45,222],oemaskgridbycoordsandradii:[72,174],progesteron:222,gethyb:[230,6,52,238,38,71],substitu:[170,116],interlock:208,oecolorcr:[72,174],nucleic:[100,208],addlegalrang:[68,166,197],oenearestnbr:[117,72,71],hurst:17,isymidset:[131,16,209,166,138,28,143],intend:[45,58,141],intact:116,constitut:[128,66,204],oewritexyzfil:[72,38,161],oehaschainid:[244,72,71,79,241,182],swapend:[127,119,71],accommod:128,libstdc:232,"1uwb":222,encapsul:[167,174],definit:[116,100,2,170,38,128,219,129,66],legal:[140,213,141],oemolstream:[161,167],n_oxid:109,molfind:167,evolv:83,exit:[135,161,167],oetriposorderatom:[72,38],content:[208,232,233],complic:173,overli:98,oegetrotam:[72,120],valueplu:101,process:[116,100,170,173,135,208,231,233,178,235,141,66,129,167,224],oeeuler:46,oewritemopacinputfil:[72,38,161],power:[45,128,178,66,161],pdb1o2t:231,asterisk:208,ration:38,broken:[116,247,232,233,129,167],mmod:[218,215,105,78],oegetcontourcolor:[72,174],found:[45,116,135,208,231,38,129,222,66],nnext:223,oebreadpod:[72,174],program_nam:174,chlorid:[116,231],isset:[68,166,197],tdt:[218,215,105,78],src:[128,228,38,174],central:219,greatli:[247,232],gregori:17,getvalencecorrect:[71,32],addconstraint:[22,66,217,167,71,177],issu:[100,230,208,231,233,159,141],degre:[116,2,49,208,77,232,52,98,141,66,178,128,58,83,222,224],intens:232,wolf:17,stand:128,neighbor:[116,63,72,230,231,233,98,141,178,219,58],act:[45,128],mean:[116,100,2,63,230,208,238,232,213,141,66,140,161,167],processor:167,oe3dtoatomstereo:[72,38],anthraquinon:100,effici:[45,116,100,17,208,231,140,128,129,222,224],pyrrol:129,oegeom3deulertoquaternion:[72,3],help_for_no_arg:174,qrh:3,dayhtml:170,oeannotatearrow:[72,174],addillegalrang:[68,166,197],terminolog:170,setdimens:[204,20,151,18,124,54,12,23,71],oepdborderatom:[72,38,232],getdoubledata:[20,6,119,65,124,12,127,71,131,16,190,18,209,138,23,80,28,143,86,151,238,42,166,246,172,54],strip:224,oegridcopygeometri:[72,174],addinterfac:[166,211],cval:174,spline:171,libgen:116,stare:116,emcss:17,certainli:45,oegetresidueatom:[72,120],getextend:[61,55],area:[45,100,238,38],aren:[208,141,98],residuenumb:196,hex:[100,174],oegetfiletyp:[72,231,38],overwrit:130,getbuff:[192,242],strict:[116,100,0,94,215,141,38,220],interfac:[45,72,100,63,116,135,257,232,233,98,230,167,222],low:[45,100,2,230,208,232,235,161,222,224],strong:[100,222],gethvydegre:[238,6,71,52],getbinaryiohandl:[47,87,137,214,160,10,71],hem:[1,208],oestring2oebondexpr:[72,38],multicoremolfind:167,eqnotaromat:77,nam:136,jtc1:167,hard:230,furthest:116,pushlin:[185,187,242,192,137,30,234,71],oebondisinaromaticrings:[72,129,38],amongst:[140,247,231],oetriposatomtypenam:[72,38],writeopthex:38,oegetdistance2:[72,38],intern:[116,17,232,233,178,213,141,167,221,222],getisotop:[6,52,238,38,159,71],compil:[100,135,208,232,233,141,167],getdata:[116,20,6,119,65,124,12,127,71,131,16,190,18,208,209,138,23,80,28,143,86,228,151,238,240,42,166,246,172,147,54],categor:224,eqsingledoubl:[77,66],faster:[116,100,63,232,98,141,66,13,167],smallstep:25,notat:[0,2,173,72,170,231,161,17,83,222],tripl:[49,0,2,232,235],oehasatomstereohydrogen:[72,38],owntrac:137,atomexpr:66,possibl:[116,173,135,208,231,232,178,247,38,161,140,219,129,167,222,66],pushfront:[89,71],oegridavgv:[72,174],oeoflavor_xyz:161,eqmet:77,escher:17,oeparsesmirk:[72,208,38,233],oegetotherneighbor:[72,38],grasp:[202,63],setprefactor:[166,42,86],oemaskgridbymolecul:[72,174],oeoflavor_sln:161,connect:[2,128,129,72,17,204,208,215,161,222,224,230,231,232,233,98,235,38,178,170,52,247],oeterminalscount:[72,38],gone:178,oeoflavor_mol2:161,agd:63,molfactori:231,creat:[45,116,173,63,204,135,230,232,233,174,161,235,238,38,178,128,140,13,167,66],getbgnidx:[127,119,186,71],certain:[45,167,222],chapter_genericdata:[45,128,63],oeismemb:[244,72,4,231,71,241,182],oechemgetarch:[72,38],isbiton:[166,228],oeinterfac:[72,100,232,257,208,166,211,174,230,233,98,222,224],fsm:141,oeassignbondivdwradii:[238,72,159,38,232],deem:[140,167],decreas:[116,66],oebasedata:[72,166,246,240,20,151,18,174,57,147],file:[116,63,66,128,129,130,72,100,133,17,204,135,208,141,24,140,219,167,222,224,230,231,232,233,98,235,38,161,13,45,247,58],nbr:[219,38],moltaggeddata:72,getresidu:[35,61,51,48],rearrang:[128,208,204,178],energi:[17,204,249,233,38,128],quadrupl:[0,235],fill:[135,63,224],incorrect:[116,230,222,233],denot:[116,0,141,233,235],oemolecularformula:[72,38,161],incorrectli:[208,141,233,98],oechemgetreleas:[72,38],idiot:98,commiss:208,oeelemno_h:[128,159,204],hybrid:[17,49,231,230,249,77,52,141,38,238,2,222],workhors:52,gettext:[166,149],event:100,idiom:[45,140,222,178],valid:[116,100,173,0,170,230,208,231,232,178,235,38,140,161,129,222,66],peo:[1,208],phenol:[66,173],spatial:[72,63,128],biochemistri:135,you:[135,161,129,173,178],oegetcom:[72,38],po4:1,numgaussian:[172,166,190],architectur:141,isinr:[186,6,119,52,238,127,129,71],polar:[241,58],getqatom:[116,54,6,71,20],oegetsolebond:[72,38],sublim:230,po2:1,symbol:[45,72,100,2,204,170,232,171,105,233,174,159,38,222,58,257],gridout:174,nichol:[159,100,17,38],oeexpandsuperatom:[72,38],imphcount:[83,105],oegeom2ddotprod:[72,3],track:[140,72,247,204,116],unbound:167,dir1:174,readopthex:38,concat:233,network:167,reduc:[116,100,208,159],getpatternatom:[71,9,254],aldoxim:208,getdist2:[41,71],rxn:[116,204,49,231,233,38],oefiledeterminepathandnam:[72,133,232,233],pariti:[230,231,232,233,98,222],crash:[100,257,231,232,230,140,167,222,224],descript:[17,204,232,2,178,66,128,161],oenumcontour:[72,174],mimic:[140,224],oeowrapperstream:[72,134,88,181,29,242],nc1o:116,potenti:[45,0,116,135,230,231,232,129,167],cpp:[159,222],escap:208,cpu:[100,167],oeslnflag:[72,38,78,96],represent:[45,72,17,247,173,135,232,235,38,128,13,58,83,222],oebitvectoror:[72,174],dist:38,consider:[167,208],atmord:38,oegetalignmentmethodnam:[72,120],neigh:219,getxmid:[131,16,209,166,65,138,80,28,143],scc:141,ala:[235,1],oereadpdbfil:[72,100,208,98,38,161],"1ma":208,scalar:[72,232,63],deleteatom:[204,20,151,18,233,124,54,12,140,23,222,71],abil:[45,161,208,233,141,66,219,13,129,167,83,222],reson:[235,222],cprev:223,oemolct:233,disk:[135,213,167,233],getbrief:[68,166,211,197],ptr:[1,133,100,233,232,220],ochem:170,oebinarytru:100,hetero:98,laid:128,articl:129,oereadmdlqueryfil:[45,13,100,38,72],init:[116,32,242,152,156,22,177,3,217,255,71],program:[45,72,17,204,173,116,135,224,208,231,232,178,161,230,38,128,219,167,222,66],those:[116,135,230,208,235,38,128,66],ci0496797:17,oenthatom:[244,72,256,71,241,182],smile:[0,2,116,66,128,130,72,100,17,208,213,141,24,161,83,222,224,230,231,232,98,235,38,219,13,45,173,170,247],getmid:[131,16,63,209,166,65,138,80,28,143],base_typ:[244,227,182,53],introduc:[45,135,230,178,141,128,167,222],setmodelnumb:[121,71],trim:204,consum:[167,233,63],oeatomstereo_left:[219,231],straightforward:116,determinist:[167,2],far:[140,0],fgrid:174,caught:222,oepdbdata:222,util:[72,233,66,128,13,222],print:[45,116,173,63,204,222,257,128,178,159,66,219,140,13,129,130],interoper:83,worst:222,getexplicithydrogen:[71,32],veri:[45,116,58,17,232,141,66,161,140,128,129,167,222,224],getymax:[131,16,209,166,138,28,143],bottleneck:167,atombondtyp:72,strang:[230,141],fad:[1,208],csd:[1,232],hyd:52,ctfile:[13,116],discret:[0,129,2],getpackedcolor:[166,149],hyl:1,oeassignimplicithydrogen:[72,58,38,235],hyp:1,peoe:247,oerxnrol:[72,253,78,116],oeexpropts_defaultbond:66,methodidx:120,stderr:161,oeatomstereo_lefthand:219,small:[17,230,208,233,141,66,140,167,222,224],"1zxv":222,eccl:17,dimens:[204,63,49,208,231,232,174,24],correct:[116,100,72,247,230,208,231,232,233,98,235,141,58,222,224],getstringdata:[20,6,119,65,124,12,127,71,131,16,190,18,209,138,23,80,28,143,86,151,238,42,166,246,172,54],getdimens:[204,20,151,18,231,233,124,54,12,23,71],unmark:141,labut:[235,17],unsatisfi:0,bondexpr:66,miquel:17,past:[208,63],setoccup:[121,71],design:[45,72,17,116,135,178,66,140,128,167],pass:[45,116,100,161,173,231,232,233,98,241,141,66,128,238,219,167],further:[45,116,173,135,13,167],oechemgetlicense:[72,38],uniquematch:217,v3000:[141,224],elementtogrididx:[131,16,209,166,65,138,28,143],oehascrystalsymmetri:[72,120],what:[45,167,17,38,66],sub:[13,100,230,232],richard:17,clock:[100,233],sun:[213,232],section:[45,0,100,167,161,173,116,247,52,178,235,186,38,128,13,129,58,130,66],oeformat_mol2:[161,230,130],abl:[128,100,208,66,161],brief:[68,211],overload:[128,233],setinsertcod:[121,71],forc:[45,230,222],delet:[116,204,173,49,230,208,231,232,233,98,12,126,140,129,167,222,71],error_level:174,version:[45,100,161,173,247,208,232,233,178,141,24,128,219,224,83,222,66],berylium:100,rgba:149,consecut:128,oeismemberptr:[244,72,231,71,97,241,182],oelonglong:174,oemediumyellow:180,method:[4,5,7,8,9,10,11,12,16,17,19,21,23,24,28,29,30,36,37,38,42,45,47,173,50,52,53,54,117,59,116,63,64,65,66,69,70,72,73,186,212,6,236,79,80,81,83,200,86,74,91,93,56,256,97,234,99,100,214,102,181,107,108,250,111,112,114,115,172,118,119,120,122,124,126,127,128,129,130,131,132,158,134,135,137,138,140,141,143,144,145,258,153,155,157,159,160,161,164,165,167,147,84,178,103,183,184,185,187,189,192,179,197,198,201,204,251,207,208,209,219,222,225,230,231,232,233,98,235,237,238,240,244,190,247,248,226],oeunarytru:100,oedot:[72,166,25],millisecond:133,simplifi:[116,247,230,208,159,24,141],full:[116,166,66,216],hash:[146,17,208,231,232,178,141,24,98,222,224],titl:[72,16,204,63,116,143,232,208,209,105,174,65,80,28,128,222,224],situat:167,proper:[140,222,224],hendlich:17,to_el:38,oeunaryfunct:[184,114,115,4,5,144,8,64,179,183,126,198,70,72,189,19,212,79,81,236,200,145,118,153,166,256,93,36,237,97,158,244,165,155,37,102,103,50,157,107,251,84,226,56,111,112,182,59],behaviour:63,thiophen:0,shouldn:[38,232],oegetuserdocumentsdir:[72,133],calculatemolecularweight:159,excess:[63,98],oegetmempoolmod:[72,174],oesameresidu:[72,38],standard:[45,0,100,204,173,116,222,230,208,231,232,178,141,38,161,167,130,66],modifi:[116,135,232,233,98,141,66,128,129,167,222],oehaspdbatomindex:[244,72,36,61,182],search:[72,100,17,116,135,208,231,232,233,98,66,140,13,167,222,224],gettoken:[185,187,192,234,30,242],oehierviewimpl:35,rbc:13,extramask:215,oeassignresiduenumb:[72,38],prior:[116,208,231,233,213,38],amount:[45,230,167],base:[45,72,100,167,17,173,63,116,222,230,208,233,174,38,178,140,128,129,58,130,66],mtrix2:100,mtrix3:100,getrxnrol:[238,116,6,71,52],exactatom:[77,66],real:[45,167],magnitud:13,medicin:17,oemdlperceivebondstereo:[72,208,231,38,98],proxim:[235,230],oesigmanormalizegrid:[72,174],primit:[72,100,2,116,170,232],planar:170,typedparametertypeid:[68,166,197],hasnextmol:[71,137],filenam:[230,208,233,174,21,141,38,161,234],ischir:[186,6,119,52,238,38,127,219,71],molchunk:231,inappropri:[208,233],magnesium:58,oesetanis:[72,38],decrement:178,oebpeektag:[72,174],oeconst:[72,142,222,75],deg2rad:14,aggress:[224,98],getimplicithcount:[238,159,6,71,52],proceed:17,oedarkpurpl:180,distinct:[128,38],getminatom:[22,177,71],stdout:[135,161],regist:213,two:[0,2,63,116,66,128,129,130,204,257,208,141,24,161,167,222,231,232,233,98,235,159,219,13,173,170,247,58],coverag:141,cischeck:222,almost:[141,2,232],ci60005a013:17,oefixedgrid:[72,16,246,131,231,166,174,65,138,80,28,143,224],taken:[116,208,128,38,219,161,167],oecl:[45,241],putmol:[160,47,71,10],travers:[45,72,204,173,135,178,66,128],minor:[0,100,257,208,231,232,233,98,230,141,38,222,224],more:[116,66,128,129,130,100,257,208,141,140,161,167,222,224,230,231,232,233,178,38,13,45,173,170,247],addvalu:[166,197],desir:[116,100],jvm:232,diol:13,oepdboflag:38,scrambl:230,c15:223,pdb2g2z:141,chuckl:0,particular:[45,116,100,63,135,38,219,140,13,129,58,66],known:[100,167,83,66],destin:224,methylasparagin:141,cach:[140,167,222],oeiflavor_mdl:161,none:[205,104,196,38,253,128,167],thread:[72,100,257,208,232,167,224],lyz:[1,141],oebinaryhandl:224,der:[238,159,17,38],outlin:[161,100],solvat:[231,17,38],remain:[116,2,230,231,38,129,58,224],paragraph:45,nine:222,morgan:17,hanoisort:[72,174],setperceiv:[204,20,151,18,124,54,12,23,71],def:[116,178,159,129,167,130],getrequir:[68,166,197],oeexpropts_exactatom:66,expdat:[38,174],oeiflavor:[72,215,78,161],scan:[100,232,63],registr:58,share:[170,128,230,167,247],reevalu:17,accept:[0,222],oemmodtyp:[72,229,78],cation:[58,2,224],sphere:[171,208],methyl:[116,100],phosphor:58,getreadfailurect:[71,137],ph2:208,oeisgrid:[72,174],substructur:[45,72,100,2,98,116,135,230,208,231,105,17,170,66,13,167,222],mrgp:105,addlegalvalu:[68,166,197],mapidx:49,silicon:232,goal:[161,38],divid:[135,116],programmat:116,ascii:[202,63],bridgehead:231,setstringdefault:[68,166,197],nbor:178,snippet:[116,235,159,219,140,13,129,167,130],oeiflavor_:161,oetriposbondtypenam:[72,38],cline:17,reject:0,scienc:[135,17],maxelem:33,getarg:[43,242],unabl:[140,161,233],upto:98,regener:208,resourc:[45,167],atp:[1,208],referenc:213,getdatait:[20,6,119,65,124,12,127,71,131,16,190,18,209,138,23,80,28,143,86,151,238,42,166,246,172,54],getbgn:[186,119,41,127,219,222,71],variant:[257,208,231,38],internet:129,ci050458q:17,oegeom3dmatrixmultipli:[72,3],oeisnitrogen:[244,72,71,241,112,182],plane:208,buffer:[100,167,187,10,192,174,239,161,137,181,224],oecolorpack:[72,174],sold:213,shinsaku:17,develop:[17,58,2,63],wilei:17,associ:[45,116,17,63,230,231,232,222,161,140,219,167,221,130],gushurst:17,oecyan:180,stabil:[100,208],undergo:[170,100],oeeulerrot:[72,38],moblei:17,pdb1rca:231,confus:[230,231,232],oesmartsparseopt:[72,113,38,78],"__typehash__":[72,174],ambigu:[0,116,233,128,129,222],caus:[116,100,2,257,208,231,232,233,230,66,167,222,224],oeseqalignmentmethod:[110,72,205,120],getmolstream:[47,71,10],alexand:17,geta:[166,149],oeoflavor_:161,oematchfunc:[184,72,71,244,241,182],lynch:17,oegetuserappdatadir:[72,133],oelightbrown:180,setpackedcolor:[166,149],oeinsamepart:[72,7,233,227,53,71],help:[257,208,232,233,98,224],semaphor:208,itf:[211,174],createpredicatecopi:[184,114,115,4,5,7,8,64,122,179,183,198,53,70,189,19,212,236,79,81,144,200,145,118,258,153,91,233,93,36,237,256,97,158,244,165,155,37,102,103,248,50,157,107,166,251,84,226,56,111,112,59],oeclearrotorcompressdata:[72,38],noindent:159,held:135,oecleargridboundari:[72,174],paper:[0,167,141],through:[45,116,100,173,63,232,233,178,66,161,128,167],oeannotatesplin:[72,174],ce1:223,pand:17,oelib:[129,232],suffer:135,rotam:120,implicitli:[231,38],oehassddata:[72,38],noresidu:105,reactant:[72,253,116],getx:[131,16,86,209,166,138,28,42,143],style:[161,232,174],sodium:58,addstartingmateri:[116,71,32],miter:116,appl:213,selenium:[100,231],complex:[45,63,135,66,161,129,222],stereoisom:[170,38],oemultiplebondcount:[72,38],html:[170,116,224],unchang:58,hasspacegroup:[65,166],cross:[100,222,233],pca:[1,232],typedef:[128,158],oeclearpartialcharg:[72,38],ci950158g:17,goof:232,good:[232,167,66,173,222],"return":[116,66,128,129,100,204,208,24,140,161,167,222,224,230,231,232,233,98,235,159,38,219,13,178,45,173,247,238],oesetdimensionfromcoord:[72,38],polaronli:38,oeexpropt:[72,208,77,66,78],residuenam:196,so4:1,sssr:[17,129,2,72],boolval:7,compound:[116,100,170,232,66,13,129],oeisoxigen:241,includeh:38,getr:[166,149],is_list_paramet:68,oearomodelopeney:[193,215,130,38,105],opaqu:167,mmask:105,oegaussiancontainerbas:[72,166,246,190,172,174],oebdatalengthbyt:[72,174],oetriposatomtyp:[72,38],instruct:100,ifd:234,easili:[45,170,100,231,222],achiev:116,isptr:30,radian:[12,120],compris:[45,116],die:167,corina:0,fulli:[135,128,58,222,224],difficult:[45,167],truncat:208,dir3:174,dir2:174,harm:[140,72,129],foggia:17,weight:[45,230,208,159,38,3,141,224],removebond:[238,6,71,12],oegeom3dtors:[72,3],weren:[230,231],functor:[116,204,72,222,231,232,233,178,128,241,219,129,167,130],realli:161,heavi:[45,17,173,230,208,232,52,98,141,241,128,129,222,224],organometal:45,oemmff94partialcharg:[72,38],oegeom3dmagnitud:[72,3],expect:[45,116,232,38,241,128,167],oebintendian:[72,174],kekuliz:141,thing:100,reduct:17,deleteparamet:[166,232,211],getbond:[54,204,20,151,18,6,254,9,178,124,23,233,12,238,219,222,71],setidx:[6,119,140,238,12,127,71],mdli:[13,116],suppos:140,safeti:[72,100,167,232,224],oegridgetlicense:[72,174],oesetsddata:[72,38],oetors:[124,38,12,18],robert:17,cubic:63,setsiz:[166,228],getreturn:[43,242],footnot:[159,58,2,130],oedarkr:180,ci00020a016:17,oegethybrid:[238,72,231,141,38],af3:1,n2669:167,matthew:17,oemolistream:[72,137,204,87,116,224,231,232,233,10,161,66,128,140,13,167,222,71,38],oefileisread:[72,133],asp:[1,83],solvent:[230,231],maxsiz:[239,216],azid:222,advanc:[45,72,173,116,140,128,167],oegeom3dgetcenterofmass:[72,230,3],upon:[100,167,17,208,231,38,128,140,2,129,58,66],oelinearinterpol:[72,231,174],asx:1,differencemap:60,attempt:[116,2,98,208,232,233,178,235,167],pub:17,like:[45,0,100,167,135,208,231,232,233,24,161,58],reason:[45,116,58,135,232,161,128,167],oelock:[72,100,95,242],oemdloflag:38,believ:[213,129],hydrid:58,oegettimeofdai:[72,100,133],canon:[45,116,100,17,173,170,230,208,105,222,215,38,161,128,83,130,96],ash:[1,17],partialchargemodel:49,asn:[1,222],bash:135,basi:17,thrown:[100,230,232],oeboundedbuff:[72,100,166,216],benzoquinon:100,c1ccccc1c:[116,66],oeispolarhydrogen:[244,72,5,71,241,182],getcommand:[68,166,197],c1ccccc1o:173,omit:[230,208,24],perhap:[45,161,222],numcoord:174,getmaxatomidx:[204,20,151,18,124,54,12,140,23,71],getmodelnumb:[121,71],getparentatom:[6,71],lifetim:140,travel:219,top:116,oeblack:180,oeinterpolatebetweengrid:[72,174],miso:105,copper:58,major:[45,0,100,257,208,231,232,233,98,230,141,167,222,224],bondtypestr:49,oewritemol2fil:[72,230,38,161],misc:[72,17],number:[0,2,63,116,66,128,129,130,72,100,17,204,257,208,141,219,167,83,222,224,230,233,178,235,159,38,241,13,173,170,52,174,238,58],o18:223,oegetformalcharg:[72,38],footprint:[167,233,63],done:[173,208,178,66,128,161,167,130],precautionari:213,holograph:17,blank:222,stabl:[45,38,140,128,222,224],miss:[116,230,208,233,98,24,219,224],stage:[247,167],mcss:[72,17,66],searchthread:167,superpos:222,differ:[0,2,116,66,128,129,130,100,135,208,141,24,161,167,83,224,230,232,235,38,219,13,45,173,170,247],restor:141,ydim:[16,209,65,80,28,143],exponenti:141,oecalcinternalcoord:[72,38,98],interact:231,oegetdelphiradiu:[72,159,38,232],gettotalhcount:[238,6,71,52],reentrant:[167,174],horst:17,outside_grid_v:174,statement:[135,178],gettypedparamet:[166,230,211],cornel:17,oeishalid:[244,72,182,71,84],choos:231,molecular:[45,72,17,173,170,230,247,159,38,161,2,129,224,130,66],store:[116,204,63,230,231,232,233,213,141,66,128,140,219,129,222,224],oegetsolesinglebond:[72,38],adher:45,assign:[116,63,129,72,17,257,208,141,140,219,83,222,224,230,231,232,233,235,238,38,13,247,58],interti:222,option:[0,100,2,161,72,208,232,233,98,66,128,116,13,167,222,38,24],para:38,o1p:[100,223],memcmp:233,oeformat_pdb:[161,130],rmsd:222,"_5mu":1,illeg:141,part:[224,7,153,233,213,38,13,129,167,83,66],pars:[45,100,173,257,208,232,233,167,83,222],qlh:3,fall:224,"_5mc":1,sign:[181,187,222,232],center:[174,63,230,208,231,232,233,98,66,3,219,120,222,38],oescalargrid:[72,16,246,63,131,166,174,65,80,28,143],anoth:[45,100,161,230,66,128,140,219,167,222],kind:[116,98],phosphotyrosin:233,oeostream_dealloc_t:133,oetanimoto:[72,174],stl:[100,230,231,232,233,161,167,222],percentcylind:174,deletegaussian:[172,166,190],sethyb:[238,6,71,52],oeerrorhandlerstreamimpl:94,oemediumbrown:180,oedefaultconftest:[40,72,74,71,128],oestringmatch:[72,174],str:[73,10,174,214,38,255,137,242],wg21:167,toward:[45,224],mink:63,doc:[170,167],negatebit:[166,228],randomli:[17,231,2],cleaner:178,comput:[17,247,63,135,208,213,141,140,129],molstream:[161,224],oeformat_can:[161,230,38,130],exert:161,strengthen:2,setal:[16,143,166],oechemgetvers:[72,38],setisotop:[238,6,71,52],packag:[135,213],cistran:146,expir:141,sheet:135,dedic:167,donnel:17,seaborgium:0,ismemberptr:[244,182],jchem:0,imagin:45,oegetcovalentradiu:[72,159,38,235],built:[135,208,66,173,178],zero:[0,63,116,247,230,208,238,232,233,98,141,38,140,222,129,58,83,130],oegettors:[72,38,120],trip:128,self:167,fcharg:96,oeemptyit:26,linu:[213,17,38],also:[0,63,116,66,128,129,130,100,204,135,208,141,140,219,167,222,224,230,231,232,233,98,235,159,38,161,241,13,178,45,186,173,170,52,247,238],oedarkgrei:180,unintent:141,build:[13,224,116],rippmann:[235,17],techniqu:140,donor:49,oecloseistream:[72,133],oegridsamegeometri:[72,174],lastbit:[166,233,228],oefileexist:[72,133],pipelin:167,oebwritedatalength:[72,174],gettransform:[89,71,12],getillegalvalu:[68,166,197],oeinternaltocartesian:98,oehasatomidx:[140,241,158],previou:[45,116,100,208,231,232,178,141,140,161,224],reach:[167,66,208,98],miscellan:98,react:116,most:[45,116,100,204,173,135,224,232,159,24,128,219,129,167,222,38],jsp:[13,116],plan:213,kearslei:[235,17],rescount:[222,224],oeiflavor_mol2:161,stereochem:[219,38],model:[0,100,17,247,173,72,135,208,232,52,222,235,141,38,128,13,58,83,130,224],charg:[72,100,2,63,116,247,230,224,208,231,105,52,17,34,215,141,38,13,58,222,66],getradiu:[6,52,238,38,159,71],oetypenam:[158,124,12],oemolbaseit:116,propyn:257,exo:[49,222],clear:[116,61,20,209,192,119,9,65,124,12,127,128,130,71,72,16,73,190,18,6,211,138,23,80,28,29,143,222,30,86,131,151,89,254,235,238,161,134,42,242,166,246,173,94,172,185,54,55,220],oefilecorrectsepar:[72,133,233],cover:[63,135,178,213,141,66,222],acach:140,destruct:[72,178,173,98],roughli:100,ext:[128,38,174],clean:[45,173],oeaddpdbdata:[72,38],incur:167,rxnrole:49,microsoft:[213,208,232],dougla:17,oestringupp:[72,174],sector:208,oetriplebondcount:[72,38],paul:[159,17,38],think:45,mexico:213,getremoveunmappedfrag:[71,32],o1cccc1:0,carefulli:116,tri:[116,100],ci00063a007:17,alanin:232,oeatomstereo_tetrahedr:219,deep:[45,72,140],particularli:224,namemask:105,uniform:161,fine:[45,230],find:[17,173,230,178,66,98],setmcmol:[71,12],access:[45,72,100,17,173,63,116,222,208,128,204,161,159,38,178,219,241,13,129,167,130],ncc:116,oeskewgrid:[72,166,246,174,65,80],copyright:213,axi:[233,38,63],circumv:167,setnam:[166,6,52,121,238,197,211,140,68,71],oeiflavor_pdb:161,oedeleteeverythingexceptthefirstlargestcompon:[72,38],oegetmachinenam:[72,133],halid:58,"kekul\u00e9":[72,100,17,173,116,170,208,235,141,24,13,58,83,130],experiment:38,getreentr:[65,166],ampersand:0,darwin:257,bondtypenam:105,intersci:17,oesetmempoolmod:[72,100,167,174],getvis:[68,166,197],remedi:224,oeerrorhandl:[220,72,100,166,224],hit:13,unus:129,laufer:17,valueminu:101,express:[45,100,173,170,208,232,233,38,13,66],oecreateisosmistr:[72,100,173,170,38,219,161],nzq:98,"3usn":222,cncn1:130,getoegraphmol:[140,161,167,66],atomfcn:38,hid:1,fastest:63,cd2:223,oeerr:[210,233,174],oeconftestbas:[164,72,74,225,40,137,128,69,71],j100785a001:17,setdata:[63,20,6,119,65,124,12,127,71,131,16,190,18,208,209,138,23,80,28,143,86,151,238,240,42,166,246,172,147,54,141],formatnotwrit:245,gridin:174,getmaxbondidx:[204,20,151,18,124,54,12,140,23,71],oxt:223,synthet:[129,17],cyclic:[222,129,66,130],coord:[46,18,89,174,140,38,117],acut:219,gridtype2:174,pam250:[205,222,120],chapter_atombondtyp:135,common:[72,100,17,204,173,247,230,208,232,178,159,141,66,161,140,128,167,222],chapter_hydrogen:52,rudimentari:140,unsaf:232,wrote:231,inerti:[222,224],keyless:[68,222],nours:17,set:[116,2,161,63,134,192,66,13,128,129,130,71,72,100,17,4,204,135,208,141,149,219,167,83,222,30,230,231,232,233,98,235,159,38,97,73,178,242,166,29,186,247,52,174,185,238,58,197],art:38,ser:[1,129],dump:230,sep:[1,100,232],overwhelm:45,tree:141,syb:140,oebgzipcompressopt:[72,38],startup:135,getmol:[160,47,71,10],mutabl:224,bulki:167,see:[0,63,116,66,128,129,130,100,204,135,208,161,167,83,224,178,235,238,38,219,13,45,186,173,247,221,52,58],dolata:17,setreentr:[65,166],getgap:[61,55],arg:[184,244,1,4,236,64,97,111,158,222,182],reserv:213,refcrd:38,analog:[45,66],aro:38,busi:213,oeostdstream:[88,181,231],argument_typ:126,expert:[45,17],handed:[219,72],se_:223,someth:[140,173,178],particip:13,oechemislicens:[72,230,141,38,222],oeset3dhydrogengeom:[72,100,257,231,233,38,222],altogeth:100,getbigstep:[166,25],oekekul:[116,100,72,208,232,235,141,38,130,224],mutex:[15,95,100,167,208],anisotrop:208,od1:223,oepredvectorptrit:98,phcorrect:49,hodgkin:17,"1ta2":231,oegeom3drotvectortotransform:[72,3],oeispolar:[244,72,50,71,241,182],printatom:116,syntact:[167,17],numer:[100,257,208,233,161,128,224],oeannotateellipsoid:[72,174],setnumgrid:[138,166,209],oestringjoin:[72,174],isom:230,isol:116,oeunarypred:[184,114,115,4,5,144,8,64,124,179,183,12,198,70,72,189,18,256,19,212,20,6,23,79,81,236,200,145,118,151,153,166,233,93,36,237,238,38,97,158,244,165,155,37,102,103,50,157,107,251,54,84,226,56,111,112,182,59],clearbit:[166,228],hill:161,lowercas:[116,100,232],rapid:[170,141,17],getmethod:[61,55],getdefault:[166,197],distinguish:[140,257],setserialnumb:[121,71],oestringtoken:[72,232,174],both:[0,116,66,128,129,100,208,141,161,167,83,222,224,230,231,232,233,98,159,38,13,45,49,105,58],hastitl:[71,12],oebitvector:[72,100,228,231,166,233,174,224],last:[0,100,232,178,141,66,129],delimit:116,license:[133,38,174],occn:116,bondmap:[184,38],retent:66,scratch:128,isomorph:[13,17,66],oereadmdlreactionqueryfil:[72,100,38,116],oegeom3dangl:[72,231,3],context:[128,178],getxmax:[131,16,209,166,138,28,143],prose:135,hbar:75,whole:[213,208],pdb:[45,100,232,230,208,231,105,78,98,215,141,233,218,161,58,222,224],albeit:66,load:[166,208,98,197,161,68],halogen:[241,58,66],beli:45,simpli:[45,116,178,141,241,128,167],consolid:141,mini:63,section_example_oechem_scaffoldextract:140,smith:17,te_plu:109,minj:63,proton:[116,230,231,232,159,238,58,222],residu:[45,72,100,49,230,208,231,232,233,98,135,141,241,120,222,224],header:[230,208,98,24,38,224],fashion:[219,222],param:211,suppli:[213,167],oebasedatatptr:[57,166,147,240,72],oegeom3dquaternionrot:[72,3],nextfloat:[199,166],throughout:[45,140],residx:[35,51,48],geoffrei:17,getydim:[131,16,63,209,166,65,138,80,28,143],forgiv:0,java:[213,257,208,159,232],all:[116,63,119,196,66,128,129,130,100,247,204,135,208,213,215,141,140,161,167,221,222,224,146,230,231,232,233,235,159,38,39,13,45,165,173,49,170,238,58],etgrid:60,due:[170,231,98],empti:[45,72,100,173,63,204,135,230,166,52,233,128,83,216],destructor:[45,161,231],loaddefault:[68,166,197],oedoublebondocount:[72,38],c3_plu:109,oeerrorhandlerimplbas:[220,72,166,94],oe3dtobondstereo:[72,208,38,222],tcmalloc:167,pdb2cgy:141,comparemol:[164,225,74,40,69,71],walter:17,oeoflavor_cdx:161,carboxyl:[247,100,231],oedarkbrown:180,flight:213,genericgrid:60,mind:0,imag:170,racem:222,gettitl:[116,63,20,65,124,12,128,71,131,16,204,18,209,138,23,80,140,28,143,151,166,54],gap:120,oethread:[72,100,43,242],coordin:[72,17,204,63,257,233,174,230,235,141,38,128,140,219,222,224],getel:[68,166,197],includepand:238,c2_plu:109,func:[122,111],rdtsc:100,getexpr:[127,6,71,44],tetra:39,look:[140,219,208,141],mle:1,arg1:[122,248,227,91,53],pickup:17,tetrahedron:17,oefloatarrai:[140,128,174],oegetsinglebondneighbor:[72,38],formalcharg:77,isequival:[139,71],"while":[45,116,161,204,135,232,178,141,128,140,13,129,167,222],getatomicnum:[116,6,52,178,159,219,140,13,129,83,130,71,238],behavior:[45,116,173,247,230,208,232,233,178,141,161,140,128,167,222,224],error:[72,166,173,204,247,257,232,233,174,230,220,82,140,161,98,222,224],oestringstripwhitespac:[72,174],oeexpropts_eqsingledoubl:66,mly:[1,232],leland:17,loos:128,loop:[116,173,222,178,66,219,128,140,13,129,130],pack:[140,149],propag:232,malloc:167,pragmat:128,oemcsmaxbond:[250,72,195,66,71],increment:178,oeoflavor_pdb_hetbond:224,clearconstraint:[22,177,71,217],nd1:223,oesetangl:[72,230,38,222],itself:[247,257,232,178,161,140,128,129,167],costli:[116,167],wave:247,virtu:167,oehastag:[72,174],quadrat:140,rid:128,seem:[45,116],oemcsmaxbondscompletecycl:[72,99,232,195,66,71],oebio:[72,61,120,110,167,222,224],perceivearomat:130,"null":[231,141,233,174],oemath:[72,230,208,232,141,3,142,14],grant:[213,17],oeqbondbas:[45,72,246,20,119,6,54,127,224,71,44],oeannotatetoru:[72,174],belong:129,oesmilesflag_extbond:231,instal:141,shorter:257,read:[116,187,63,185,192,66,128,129,71,72,100,204,135,257,208,137,141,161,167,222,30,224,230,231,232,233,234,13,98,242,45,186,173,247,52,58],oebitvectornumword:[72,174],getlin:[185,187,242,192,137,30,161,234,71],c1cccnc1:173,word:167,dozen:224,neutron:[238,159],behav:[241,0,129,167],anticlockwis:2,isfals:[244,212,182],x86:100,optic:213,optim:[100,257,232,233,98,128,224],getzinc:[131,16,209,166,138,28,143],oebwritefailur:245,cn1c:173,sym:38,alert:233,sybyl:[17,247,230,208,213,161],lig:[1,208,224],temporari:[140,161,233],user:[45,116,100,167,161,222,257,231,233,178,141,38,128,140,219,129,58,130,224],databank:[161,17],along:[116,63,257,141,219,224],asregulargrid:[65,166],stack:[100,257,224],recent:[247,231,100,208,141],oenewqmolbas:[45,72,38],lower:[128,208],task:[45,173,230,208,159,24,161,129,58,222],machineri:[17,232],older:[141,233],entri:[100,173],oeannotationprimit:[72,171,176],chemistri:[45,17,135,231,232,247,38,140,129],elem:159,"try":[232,233,123,66,167,242],gaussiansmoothminu:101,moh:1,www3:17,expens:[140,167,63],eyesopen:[45,58],c1_:223,oegridmaxv:[72,174],oegetkappa:[72,174],spend:45,propos:129,aromat:[0,2,116,66,129,130,72,100,17,186,208,77,141,161,83,222,224,231,232,98,235,38,241,13,173,49,249,52,247],n1ccncc1:130,construct:[72,100,174,173,63,116,230,204,231,232,233,98,213,66,128,13,167,224],tortyp:120,unsatur:[140,13,257],gettors:[71,12],prompt:161,mol:[184,116,1,63,156,120,66,128,129,130,204,208,137,141,24,140,219,167,255,32,232,233,98,235,159,38,161,13,178,45,168,173,174,117,58],exclud:116,s1cccc1:[0,141],obscur:[208,231],oecopyhistori:[72,38],question:167,p_oxid:109,oermsd:[72,257,231,233,120,38,128,98],pdb1oj7:98,oeatomstereo_right:[219,231],cut:[167,208],n_pyrol:109,setatomicnumb:52,perpendicular:100,oegeom3deulerrot:[72,3],danger:[128,233],oeunknownoebdata:174,theoret:[129,17,232],informat:[45,72,135],cuf:45,aromodel:[49,13,130],appli:[45,116,233,141,66,128,159,13,167,130],getrgba:[166,149],hasperceiv:[204,20,151,18,124,54,12,23,71],subsequ:[116,66,219,128,13,222],approxim:[72,2,203,247,208,141,66],oesize_t:[100,133,73,192,137,214,239,187,10,181,216],bin:[45,116,173,63,204,232,128,105,78,178,161,218,215,66,219,140,13,129,167,130],setbasedata:[6,119,65,124,12,127,131,16,190,209,138,23,80,28,143,86,238,42,166,246,172,54],shellei:17,vendor:[213,222],oeomega:128,transpar:161,improperli:208,big:[167,63],molecul:[0,2,63,116,66,128,129,130,72,100,17,204,135,257,208,141,24,140,219,167,83,222,224,230,231,232,233,98,235,38,161,13,178,45,186,173,170,52,174,247,58],popbasedatat:[72,174],oeinitannotationhandl:[72,174],o17:223,insert:[116,224,167,161,128],oegridminv:[72,174],bit:[45,100,228,230,231,232,233,174,167,222,224],getresiduenumb:[121,31,61,71],dalbi:17,pyrimidin:66,valent:[100,58,208],success:[100,233],gridtyp:[131,16,174,209,138],signal:[167,106,242],phosphoru:[241,208],n_pyridin:109,elaps:[191,166,188],collect:[135,222,178],arthur:17,api:[45,72,204,173,116,135,257,208,232,233,178,230,241,66,161,140,128,167,222,224],valenc:[72,2,116,49,77,52,247,141,58,222],isxmidset:[131,16,209,166,138,28,143],oeopenistream:[72,133],oemolbasetype_oedbmol:100,oeformat_skc:161,oemcmolbas:[45,137,208,74,20,151,18,40,233,69,225,164,38,128,120,71],encount:[135,230,232],sketch:[161,100,222],toomanyatom:245,nbyte:174,oebinarypred:[72,166,258,7,91,233,53,122,27,227,248,224],tym:1,oe3:223,bconf:128,oe1:223,visibl:68,some:[0,116,100,186,135,141,24,140,161,167,83,222,224,230,231,232,233,98,235,238,173,247,52],back:[135,208,232,233,98,141,140,128,167,224],c1ccncc1:173,unspecifi:[219,2,232,233],sampl:219,oeplatform_oein:232,oesymmetrynumb:[72,38,224],consciou:129,csv2sdf:208,compressmcmol:38,sizeof:233,surpris:173,setrangeoff:[166,233,228],abandon:161,oealloc:[72,133],scale:[167,208,174],closest:63,though:[116,208,232,66,128,219,167,222],per:[140,1,208,38,63],oemoltyp:18,bruce:17,substitut:[13,232,208,38,116],mathemat:17,larg:[116,17,63,170,257,208,232,233,230,141,24,129,167,222,224],slash:230,oebhandiniti:174,reproduc:[247,213,2],oecastdata:[72,174],machin:[213,100,17],intial:233,oeoflavor_gener:161,run:[173,257,232,98,161,167,43,230,242,224],oegetradiu:[72,174],oegetchi:[72,224,120],oelightgreen:180,oer:180,sfc:141,"1hnv":222,agreement:213,unlik:[0,141,161,235],oefileextens:[72,230,233,174],step:[116,25,224],santa:213,getconf:[128,124,71,18],automorph:[38,233,224],oeb:[100,63,230,208,231,105,78,232,215,141,233,161,218,128,167,222,224],addbasedata:[6,119,65,124,12,127,131,16,190,209,138,23,80,28,143,86,238,42,166,246,172,54],cgu:[1,232],oehasatomstereospecifi:[244,72,71,241,198,182],oelightorang:180,oegetsubtre:[72,38],hidden:[163,98],idx:[37,174,157,38,3,140,68,158,197],constraint:[135,230,66,128,13,224],preclud:167,oegeom2dscal:[72,3],bgn:[38,4,97],"h\u00fcckel":[72,100,173,170,208,235,141,24,13,58,83,130],unichem:257,oefiledeterminepath:[72,230,133],dialog:232,oehybrid:[72,62,238,38,78],hcount:[77,38],gamma:[65,120],oegeomdotprod:[72,3],file3:161,file2:161,file1:161,compactli:2,oegeom2dadd:[72,3],primarili:[45,233],electrostaticgrid:60,pythonpath:135,"1sre":100,bankruptci:213,ellipsi:128,setradiu:[238,6,71,52],todai:129,alpha:[100,135,120,65,241,140,222],equival:[45,0,100,2,116,135,230,231,38,161,129,83,66],chang:[116,66,128,130,100,208,213,141,24,140,161,167,222,224,230,231,232,233,98,238,13,45],manag:[45,72,100,116,230,232,128,167,222],macromodel:[161,231,213],robust:[100,17,230,208,232,222],span:224,getdatatyp:[20,6,119,65,124,12,127,71,131,16,190,18,209,138,23,80,28,143,86,151,238,240,42,166,246,172,147,54,57],enabl:[0,232,116],lone:232,live:45,fast:[17,98,141,66,140,167],custom:[45,247,129,231,224],gaussianminu:101,readvalueanddefaultbinari:[68,166,197],splinesurfac:171,arithmet:63,includ:[45,116,100,63,222,224,208,231,232,233,98,213,141,38,161,241,128,129,178,130,66],suit:116,forward:[230,167,224],oecreateabssmistr:[170,72,230,38],pdb2gd0:141,oewritemdlfil:[161,72,231,38,98],etc:[116,2,208,232,161,129],oeatomstereo_tetra:219,properli:[100,222,233,224],cc1c2cccc:100,subgraph:[13,129,17,66,232],oethreadloc:[72,100,90,242],potassium:58,oversight:98,hounshel:17,oemcstype_exhaust:[141,66],oegethcount:[72,38],state:[116,58,17,173,230,208,65,141,38,128,167,224],link:[100,167,257,224,178],translat:[231,224],resetreadfailurect:[71,137],delta:38,iapr:17,don:[257,208,233,235,161,167],serin:233,iqueu:167,openstr:[47,10,137,214,161,98,71],tripo:[247,230,208,130,213,38,161,222],info:[220,166,82],concaten:[0,230,208,161,116],cactu:0,oemmffatomtyp:[72,38],consist:[45,247,257,231,233,159,24,13,167,230,224],cid:17,getcolor:[172,166,42,86,190],getstrict:[220,94,166],caller:231,oebondisinrings:[72,129,38],cin:233,craig:17,h2u:[1,100],oehierresidu:[72,31,48,51,61,120,35],oethefunctionformerlyknownasstripsalt:[72,38],macromolecul:45,oefileisdirectori:[72,133],getxinc:[131,16,209,166,138,28,143],highlight:[66,222],oe4:223,setimpl:[255,61,55,71],impl:[255,55],constant:[60,1,113,62,193,194,196,243,125,14,130,15,72,202,203,75,205,229,76,77,171,78,215,210,218,219,142,167,83,222,223,85,146,148,33,231,82,34,101,159,96,39,161,162,163,245,204,169,49,104,249,105,175,176,253,110,180,136,109,154],valu:[116,2,63,65,66,128,68,130,204,208,141,140,161,167,83,224,230,231,232,233,98,235,159,38,219,173,247,129,174,238,197],bind:233,metal:58,parser:[0,100,230,208,231,232,233,141,24,83],gettimeofdai:100,doesn:[45,235,100,232,233],lectur:17,"char":[120,184,187,115,252,20,192,119,10,121,124,255,12,68,16,133,73,18,156,209,211,137,21,22,23,25,217,143,31,149,79,87,32,151,231,232,233,234,35,238,38,228,92,246,47,48,214,181,51,174,177,220],program_vers:174,incomplet:116,isconnect:[238,6,71,52],oemaskgridvalu:[72,174],elemno:[159,38],guarante:[45,208,231,174,66,140,128,167],isdigit:232,lyn:1,oeiscalpha:[244,72,71,241,182,183],chemoinformat:[140,38],oebinaryand:[72,166,231,91,227,53],peter:17,getzmin:[131,16,209,166,138,28,143],nad:[1,208],pdbdata:[231,222],sequenti:[140,219,38,173,233],nan:[222,233],invalid:[100,173,230,208,232,141,140,161],getzmid:[131,16,209,166,65,138,80,28,143],nar:136,oeconfigur:[72,174],swath:100,priori:230,bmap:195,angstrom:[235,100],similarli:[45,2,66,161,13,129,167,130],oeisrotor:[244,72,8,233,71,241,182],splinetyp:174,oeatomgetsmallestrings:[72,129,38],draw:[128,100,141,98],polonium:231,gigabyt:100,oebreaddatalength:[72,174],o3p:[100,223],oeproperty_compon:116,finit:17,william:17,oegeom3dplanarcoord:[72,3],meaning:[129,233],setydim:[143,16,209,166],lent:213,seg:100,oesetatomcom:[72,231,38],score:[72,208,66],ostr:174,unaffect:128,oechemgetsit:[72,38],oesmilesflag_rgroup:[230,83],figuera:[129,17,66],oeerrorlevel_quiet:100,algorithm:[45,72,100,17,173,247,208,231,232,235,141,140,128,129,238,83,222,224],vice:219,dvd:213,confirm:222,rather:[45,2,173,135,257,208,232,233,98,230,128,219,167,83,222],orbit:[247,17],notion:[0,38,128],discrimin:66,depth:140,cc2:219,oehasconfidx:[241,158],convert:[116,173,232,233,98,159,66,161,58,222,224],hello:[135,140],setaxi:[238,6],issulfur:[238,6,71],code:[116,63,128,129,130,100,17,204,135,208,24,140,161,167,222,224,230,231,232,233,235,219,241,13,45,173,174],midpoint:[63,174],edg:[17,66],qian:[129,17],ci60017a011:17,commun:[140,213,100,167],edo:[1,208],gethvyval:[238,6,71,52],c1ncncc1c2cocc2:130,cutoff:[128,208],block:[116,63,230,13,167,222],oeidxselect:100,oepdboflag_el:222,oearomodeltripo:[193,215,105,130],screen:[17,232],oeisread:[72,208,141,38,222],intrins:208,compact:[135,222,173],addparamet:[166,211],oeiflavor_can:161,oeperceivesymmetri:[72,231,38,98],sensit:208,oegeom3dscal:[72,3],oeconfbaset:[72,46,246,89,124,23,38,12,140,128,71],friendli:222,oeogzstream:[72,100,134,88,181,233,29,242],oeerrorlevel_verbos:224,atomtypenam:105,n_plu:109,oegetpdbdata:[72,100,38],opposit:58,aris:[13,213],fatal:[166,230,233,82,220,140,161],sent:167,func2:[248,236,91,64],func1:[248,236,91,64],oeassignhybrid:[238,72,231,38],"3cal":38,kellei:17,getsmallstep:[166,25],oegetresidueindex:[72,38,232],numreact:[71,32],skipbyt:[185,187,242,192,137,30,234,71],electron:[247,213,130,222],volum:17,islegalstr:[68,166,197],reactionqueri:[38,125],mingw:224,oecheckhelp:[72,174,233,98],syntax:[0,2,173,72,135,232,178,170],oeisheavi:[244,72,144,71,241,182],relev:[219,63,98],rad:208,oesubtractgrid:[72,174],apostroph:208,dname:133,perceiv:[45,100,173,49,230,208,231,232,233,222,235,141,38,219,13,130,224],michael:17,multiconform:230,unquot:0,cnc:[116,130],oedeletesddata:[72,208,38],race:167,misspel:233,appar:233,addstringdefault:[68,166,197],getnbr:[117,127,119,71,178],trp:1,getislist:[68,166,197],barbara:17,oedbmol:[100,257,233,243],pleas:[45,13,66,135,116],impli:[219,141,222,233,213],smaller:[13,208,66],paid:116,oebondisinr:[244,72,114,71,241,129,182],c1ccccc1:[0,173,116,178,66,83],cambridg:[17,38],oecopypdbdata:[72,38],fold:[208,232],"1o3o":231,oeoflavor_fasta:161,download:[13,116],nmr:222,acid:[100,135,230,208,231,232,141,224],carlo:17,hie:1,compat:224,index:[0,100,241,204,63,72,170,222,232,52,186,140,233,116,128,129,83,130],c1ccccc1cccbr:178,compar:[232,233,174,141,66,128,129,83,222],selenophen:0,tagtyp:174,slight:232,oefuzzv:[72,154,78],henceforth:[128,66],aitr:178,g5p:141,oeisrgroup:[244,72,37,71,241,182],o3_:223,oegridhasnonzerovalu:[72,174],smilein:173,whatev:66,penalti:66,oehierfragimpl:48,oegetaverageweight:[72,230,208,159,38,222],led:0,cam:38,despit:129,atommemberpr:49,gillet:17,od2:223,endian:[233,224],len:[174,187,246,20,151,192,18,137,3,140,161,10,181],closur:[49,0,231],brookhaven:17,let:45,leu:1,oeassignformalcharg:[72,247,208,235,24,58,38],safer:141,becom:[116,230,63],oemovearrai:[72,174],heurist:[100,231,233,224],gridobject1:174,tellurophen:0,setsecondarystructur:[121,71],syracus:0,great:[129,224],didn:[231,232],oesmartslexreplac:100,convers:[45,17,66,233],ctr:[128,38],oescramblemolecul:[72,38,232],larger:[100,208,66,98],reus:[45,72,173,98,178,161,167],oeisaromaticbond:[244,72,118,71,241,130,182],oeformat_mf:[161,130],skiplin:[185,187,242,192,137,30,234,71],rdf:[218,161,215,105,78],light:[45,141],oegetgridformatstr:[72,174],dopamin:66,numpoint:174,honor:[24,98],chanc:[135,140,167,141],fujita:[129,17],sheila:17,oegraphmolparamet:98,n1ccccc1:178,oeisreadablegrid:[72,174],rgroup:[0,83,38,105],nearest:[230,222],solut:[135,13,17,66],oereadsketchfil:[72,38,161],foundat:[213,222],issettostr:[68,166,197],oegetdoublebondneighbor:[72,38],setymid:[143,16,209,166],"boolean":[116,219,233,173,235],oebinaryiohandlerbas:[174,246,87,38],iodin:58,oefiles:[72,230,133],scmol:[151,128,20,71,18],oehierresimpl:31,oeshortestpath:[72,100,38],oeoflavor_can:161,sptr:[214,137],oegridcopycont:[72,174],setxmid:[143,16,209,166],from:[0,4,5,7,8,9,10,11,12,16,17,19,21,23,24,26,28,29,30,36,37,38,13,42,44,45,46,47,173,50,53,54,56,57,58,59,116,63,64,65,66,68,69,70,72,73,87,212,6,236,79,80,81,200,86,74,88,91,254,93,94,256,97,234,99,100,214,102,181,107,108,250,111,112,114,115,172,118,119,122,124,126,127,128,129,130,131,132,158,134,135,137,138,140,141,143,144,145,147,258,153,155,157,159,160,161,164,165,167,40,174,84,178,103,182,183,184,185,187,189,190,192,195,179,197,198,201,204,251,207,208,209,213,219,222,224,225,227,230,231,232,233,98,235,237,238,240,244,246,247,248,226,257],chg:[13,208],oedarkcyan:180,upgrad:232,oeannotationrenderhint:[72,176,175],next:[45,0,178,235,128,129],few:[45,231,233],doubt:63,usr:[45,116,173,63,204,135,128,178,161,66,219,140,13,129,167,130],save:[230,167,159],cliqu:[72,231,66],oeclearsddata:[72,38,222],pushback:[89,71],mirror:170,sort:[166,232,233,178,140,66,27,167,222,224],newconf:[128,124,71,18],comparison:[231,100,17,233],factor:[235,208],mismatch:[247,224],oeannotatespher:[72,174],oeand:[244,72,166,236,231,232,182],trail:233,appeal:141,oeifstream:[72,100,187,88,234,242],bcrd:128,suscept:100,weightatom:38,zamora:[129,17],iii:0,oemdlsetbondstereo:222,oecolorget:[72,174],oemmffclearremappedel:[72,38],account:[116,167,17,222],hpux:224,retriev:[116,100,161,63,257,230,213,238,38,128,140,219,222,66],oldfnam:133,scalabl:167,alia:[68,231],oecycletim:[72,100,133],annot:141,ch1:223,ch2:[208,223],ch3:223,obvious:129,thin:[141,222],kozel:[129,17],oeolivebrown:180,meet:128,proof:[232,98],control:[45,72,116,232,178,66,161,13,167,83],hip:1,iodid:231,getproduct:[116,71,32],tar:135,oegeom3dtransl:[72,3],superposit:98,lock:[100,167,232,233],molfil:24,o2p:[100,223],setstereo:[186,233,6,119,232,52,238,38,127,219,71],tad:17,oebigendian:[72,133],isnitrogen:[238,6,71],tag:[100,208,246,240,20,151,230,18,231,233,174,124,141,38,128,57,222],proprietari:213,tab:[208,24],onlin:[170,17],sought:167,msvc:[233,224],cygwin:233,oeexpropts_eqcaliphaticon:66,serial:[167,224],oegetdatatyp:[72,174],fitcrd:38,o2_:223,surfac:[45,171,208,238,38,141],getzmax:[131,16,209,166,138,28,143],irix64:224,oecleararomaticflag:[72,232,130,38,235],getfromdatabas:161,qflavor:13,prevent:[116,232,233,98,141,66,161,128,167,222,224],oemoltmplt:233,acycl:[100,208,129],segmentresolut:174,bmask:38,instead:[116,100,204,173,247,230,208,232,233,178,235,141,24,140,161,58,38],oegetspacegroupnumb:[72,120],oemempoolmode_mutex:167,medium:213,inher:[128,167,222,63],oemakehex:[72,174],oesinglebondcount:[72,38],overridden:[13,161],oegeom3deulertorotmatrix:[72,257,3],oehasdoublebondo:[72,38],o22:223,o23:223,singlethread:[15,167],oegetcontourlevel:[72,174],c1cnc2nccn2c1o:116,tpo:[1,100,232],attent:116,discard:[116,66],redund:[159,222],philosophi:45,physic:[17,38,222],setord:[127,119,186,71,98],oegetnbratom:[72,182,71,126],alloc:[173,230,208,233,222,167,257],drop:[167,98],essenti:[247,129,17],getend:[186,119,41,127,219,71],nativ:232,oesetthreadsaf:[72,100,232,174],seriou:[230,141,98],counter:[219,167],correspond:[116,173,170,230,232,38,128,83,66],aminoethanol:116,predictor:58,getalias:[68,166,197],mainten:[213,231,98],allow:[0,63,116,128,100,204,135,208,141,24,140,161,167,83,222,224,230,231,232,233,98,235,13,178,45,170,247,58],toru:171,fallback:232,getalternateloc:[121,71],rfile:116,cd1:223,oesetupgrid:[72,174],elif:219,adjust:[247,13,128,116],creation:[140,72,222,204,128],oecompress:[72,133],routin:[45,100,135,257,208,231,232,233,98,230,141,161,129,167,130,224],oelibrarygen:[116,100,72,208,231,233,32,71,224],move:[45,208,233,161,222,224],microsystem:213,whilst:[161,58,232],getsecondarystructur:[121,71],comma:232,catmol:231,liabl:213,c16:223,deleteconf:[18,98,124,128,222,71],treat:[45,230,208,231,24,128,13,167],consensu:129,disambigu:208,pyconfpred:232,settitl:[54,16,204,20,151,18,209,166,65,138,124,23,12,80,28,143,131,71],tritium:[0,208],mcmol:[38,71,18],oeexactgraphmatch:[72,38],oemdlclearpar:[72,38],elementari:129,oesetpdbdata:[72,38],therefor:[45,116,167,2,66,128,13,58],oeaddgrid:[72,174],getlegalrang:[68,166,197],oedarkorang:180,oechem:[0,2,5,7,8,12,100,17,18,19,20,22,23,24,161,167,31,35,36,38,13,45,48,173,50,51,52,54,55,56,58,59,116,63,66,70,71,72,6,78,79,81,83,84,93,256,178,155,102,107,112,114,115,118,120,124,126,128,129,130,135,137,140,141,145,151,157,159,165,37,168,170,174,200,103,183,184,189,144,193,179,198,204,251,257,208,219,221,222,224,230,231,232,233,98,235,237,238,241,247,226],getintegersset:233,oeacyclicpath:[72,38],greater:[100,231,141,38,140,128,129,222],oeprocesssystemcommand:[72,133],handl:[45,72,100,116,257,208,231,232,233,98,230,141,167,222,224],auto:[148,224],getbackbonematch:[61,55],dai:45,gridobject2:174,oereadoldbinari:[72,38,161],repositori:100,mention:[219,66,130],pyridin:66,facilit:161,stout:45,oegetpdbbasedata:[72,38],trade:[213,100,66],c14:223,anomal:100,mdlpariti:105,sdf:[247,208,128,105,78,215,233,13,218,161,167,222],align:[100,208,222,224,120],iydim:[16,209],oebwritepod:[72,174],typo:208,anyth:[128,233,173],edit:17,oegetsoledoublebond:[72,38],tran:[132,208,230,207,89,231,146,233,98,224,11,3,219,120,83,222,38],indol:129,follow:[0,4,5,7,8,9,10,11,12,16,19,21,23,24,26,28,29,30,36,37,38,13,42,44,45,46,47,173,50,53,54,56,57,58,59,116,63,64,65,66,68,69,70,73,87,212,6,236,79,80,81,83,200,86,74,88,91,254,93,94,97,234,99,100,214,102,181,107,108,250,111,112,114,115,172,118,119,122,124,126,127,128,129,130,131,132,158,134,135,137,138,140,143,144,145,147,258,153,155,157,159,160,161,164,165,167,40,174,84,178,103,182,183,184,185,187,189,190,192,195,179,197,198,201,204,251,207,208,209,219,225,227,230,232,256,98,235,237,238,240,244,246,248,226],getgz:[47,87,137,214,160,10,71],enclos:63,oeswapaieresidueatom:[72,120],tracer:137,person:213,unwind:100,expans:233,themselv:[45,230,167],oegetabstors:[72,38],retainisotop:38,oewritegrid:[72,174],predic:[72,100,204,231,232,178,241,140,128,129,130],combinatori:[0,233,116],"static":141,oeskewgridimpl:65,oemol:[45,72,208,20,151,257,18,233,174,141,38,128,71,224],our:[100,232,161,129,58,224],oegetdefaultmass:[72,159,38],reiniti:222,special:[184,100,17,240,227,147,38,161,128,167,182,224],oemakegridfromcenterandext:[72,63,174],variabl:[135,167],oeinitdefaulthandl:[72,38,222],bondfcn:38,oeformat_mmod:[161,130],getostream:[47,71],influenc:66,bioresidu:72,oeoflavor_mf:161,your:[135,161,63],categori:[116,222,232],typenam:[246,20,151,18,174,27],m2h:[215,38],clockwis:[219,2],rel:[116,219,100,38,66],lattic:63,setpartialcharg:[247,238,6,71,52],oeresidueindex:[72,1,232,78],getexplicithcount:[238,6,71,52],defens:222,red:66,statist:17,sp3:[231,62],achir:208,getdetail:[68,166,211,197],insid:[100,63,231,178,38,167],prolin:230,manipul:[45,116,231,232,128,140,13,222,224],oemarkmalloca:[72,133],oeatomisinreact:[244,116,182],oeunknownoebdatatagnam:[72,174],usabl:128,dictionari:222,latest:208,releas:[72,100,231,106,232,123,141,67,167,221,222,242,224],oein:210,queri:[45,72,100,2,116,230,231,233,38,128,13,129,222,66],oemmfftypeindex:[72,38],complianc:116,exemplifi:45,zap:100,oegeom3ddistance2:[72,3],indent:232,precaut:161,oecreatecansmistr:[45,72,173,116,170,38,161,130,66],oeatomisinaromaticrings:[72,129,38],could:[257,208,231,232,98,230,235,141,66,178,128,167,222],put:[45,166,214,71,128,167,216,239],mac:257,david:17,counterpart:116,oeiflavor_mmod:161,length:[185,187,63,192,65,131,100,73,257,208,209,21,29,222,30,224,88,230,233,234,235,134,98,242,181,174],oelimegreen:180,midz:[65,143,16,209],outsid:63,transfer:38,geometri:[257,208,231,174,230,141,38,222,224],retain:[116,141,66,222],ionic:[238,231,159,38],zmatrix:98,unexpectedli:[100,98],oqueu:167,isbn:17,suffix:[161,222],oehistogramformula:[72,38],christoph:17,og1:223,string_default:68,oetriposatomnam:[72,38],oenewmcmolbas:[45,72,38],getpattern:[22,217,66,71,177],date:141,dayhtml_tutori:[170,116],lib:141,oetracerbas:137,gethandlerimpl:[220,166],oemacromodeltypenam:[72,38],cheminformat:222,facil:[45,213,66,222],oebitvectorand:[72,174],oeinitgridhandl:[72,100,174],prioriti:[0,208,66,211],oegetnumprocessor:[100,167],isspacingset:[131,16,209,166,65,138,80,28,143],oeregistermolparamet:[72,257,208,174],weining:[0,17],commandlin:100,start:[72,100,116,135,228,166,256,232,191,188,129,167,43,242,224],unknown:[233,76,141,232,62],licens:[213,230,141,222],perfectli:[231,66],flag:[20,151,230,18,233,98,235,141,161,13,129,167,83,130],capac:128,messag:[257,231,233,173,224],grow:[135,222],minimol:100,koehler:17,oecomposedmcsfromcliqu:[72,38],oeparamvis:[72,176,24,163],termin:[116,100,247,257,208,232,233,230,141,66,161,222,224],oecallonc:[72,133],"final":[45,116,232,141,58,222],istream:231,prone:[247,167,204],getchi:224,shell:135,lot:100,oegaussian:[72,166,42,86,246],oecanonicalorderbond:[72,224,38,222,98],osptr:134,juli:98,cyx:1,oedarkgreen:180,oeiflavor_smi:161,frag:159,aldehyd:[116,233],oerotamerlibrari:120,oemopacoflag:[34,72,38,78],exactli:[167,58,2,161,116],sthrd:167,cym:1,oecondit:[72,100,106,242],atomtyp:[49,105],oereadhead:[72,38],isosmi:230,unmap:[116,231,66],prune:38,protocol:233,couldn:208,oegetnearestnbr:[72,38],structur:[45,72,17,170,116,135,231,208,128,232,178,235,141,38,219,140,13,129,167,222,66],charact:[0,100,116,257,208,232,24,224],claim:213,oebondstereo_tran:219,molextract:232,oeinitializehandl:[72,174],dubiou:[0,98],rate:100,matrix:[257,231,233],result:[116,247,227,0,135,230,208,231,232,233,98,213,141,66,161,140,13,178,182,224],oefileislink:[72,133],stdin:[100,173,232,233,161,167],subtract:116,oesetdefaultoflavor:[72,38],clip:116,oegeom3drot:[72,3],deprec:[100,222],clearli:141,chapman:17,chlorin:[219,58,116],corrupt:[230,208,232,98],oegetfileextens:[72,38],ihlenfeldt:17,matchord:49,have:[0,116,66,128,129,130,100,135,257,208,141,140,161,167,83,222,224,230,231,232,233,178,235,38,219,13,45,247,221,58],close:[185,187,192,10,71,73,137,21,161,167,30,224,87,230,232,234,214,160,134,242,29,47,181],need:[45,100,135,208,232,66,161,140,128,129,167,222],element:[0,208,17,204,63,20,151,72,257,18,231,105,222,230,141,38,159,58,130,232],rotor:[49,100,222,233,224],getmaxmatch:[22,177,71,217],depict:[219,129,208,66,233],cal2j:75,min:[128,233,63,82],babel:[45,129],getillegalrang:[68,166,197],contour:174,istr:174,preced:[219,167,2,173,63],decis:[45,72,129,135,128],which:[0,2,116,66,128,129,130,100,135,208,213,141,24,140,161,167,222,224,230,231,232,233,178,235,159,38,219,241,13,45,173,170,247,58],baber:[235,17],unproduct:66,distribut:[247,213,208,98],cofactor:100,guidobaldi:17,divers:[100,66,129],cc1cccbr:66,deposit:98,generatedata:161,"000000e":63,macro:233,unless:[167,58,231,66],ssize_t:233,clash:[135,230,222],principl:[128,222],pdb2np9:141,oewriteoldstylegrid:[72,174],oegeom2dtransl:[72,3],multitud:129,setrequir:[68,166,197],oegettagnam:174,eight:2,hydroxyl:100,setsmallstep:[166,25],segment:[63,230,231,232,98,140],why:[45,167],tensor:224,oedarkyellow:180,oeprogressstream:[88,187,30],stereo:[100,233,186,170,230,208,231,232,52,98,141,66,219,241,13,224,222,38],doubl:[0,2,20,172,120,195,124,66,12,13,128,71,16,133,190,18,232,207,208,209,23,201,219,143,222,224,187,151,89,231,132,233,98,235,159,38,3,238,41,99,46,246,49,181,250,52,174,108,117,168,58,257,11],won:233,oeiflavor_gener:161,oematchbas:[72,177,233,254,9,22,38,217,222,71,66],setlevel:[220,94,166],minmax:[143,16,209],request:[219,257,167],findlai:17,deuterium:[0,208],pipe:[161,222,233],"class":[2,4,5,106,7,8,9,10,11,12,16,18,19,20,21,22,23,25,26,27,28,29,30,31,32,35,36,37,38,3,40,41,42,43,44,45,46,47,48,50,51,52,53,54,55,56,57,59,116,61,63,64,65,66,67,68,69,70,71,72,73,87,212,6,236,79,80,81,84,86,74,88,89,90,91,92,93,94,95,256,97,234,99,100,102,181,107,108,250,111,112,114,115,156,117,118,119,121,122,123,124,126,127,128,129,130,131,132,133,134,135,137,138,139,143,144,145,147,149,150,151,152,153,155,157,158,159,160,161,164,165,166,167,168,172,173,174,177,178,103,182,183,184,185,187,188,189,191,192,195,179,197,198,199,200,201,190,206,207,208,209,211,216,217,219,220,222,224,225,227,228,230,231,232,233,98,214,237,238,239,240,242,244,246,248,251,252,226,254,255,257,258],determin:[116,63,66,128,129,100,17,208,141,24,140,219,167,83,222,224,230,232,233,178,235,38],ci6002152:17,occasion:[161,208,231,233,98],constrain:66,setalternateloc:[121,71],oecopysddata:[72,38],fact:[45,170,230,135,13,129,167],setflavor:[47,87,10,214,160,161,13,137,130,71],oeexpropts_eqaromat:66,aba:[1,232],oehastriplebond:[72,38],oegetalign:[72,120],oeexprbas:[72,20,231,252,54,38,139,71,44],text:[17,135,171,231,232,174,149],filetyp:174,verbos:82,oeformat_mdl:[161,130],oegeom2dcopi:[72,3],bring:[222,224],acetsali_2:128,settyp:[166,186,6,119,52,65,238,127,143,71],genericdata:72,oesuppresshydrogen:[72,232,233,141,38,222],trivial:[45,232],eas:161,untermin:222,redirect:161,oebinaryread:[72,161,174],locat:[100,247,135,230,208,232,235,128,167,224],oehaspartialcharg:[72,38],illus:100,oeinvertcent:[72,231,38,232],anticip:116,oesetcom:[72,141,38,98],getyidx:[131,16,209,166,138,28,143],oegetautomorph:[72,38],bug:[100,257,208,231,232,233,98,230,141,24,222,224],manufactur:213,cur_grid:174,temperatur:208,section_example_oeoechem_aromodel:130,tape:213,oebondstereo_ci:219,ngr:100,oecreatesmistr:[72,116,230,231,38,161,83,130],sulfur:[208,231,141,66,241,58,222],local:[135,100,167,2],hope:45,meant:[135,167,232],oedoublebondcount:[72,38],beverlei:17,"_2mg":1,gettyp:[166,186,6,119,52,65,255,238,139,127,143,71],pull:[135,222],familiar:[45,128],sanson:17,hire:213,bear:[141,222],autom:17,six:[129,232],joint:17,theori:[170,72,100,208],oeunlink:[72,133],increas:[116,100,167,208,224],"_7mg":1,section_example_oeoechem_molgrep:66,bondi:[159,141,17,38],lossless:233,takahashi:[129,17],oetokenizerbas:38,oegetsddata:[72,38],amid:[116,222,233],getfloatdata:[20,6,119,65,124,12,127,71,131,16,190,18,209,138,23,80,28,143,86,151,238,42,166,246,172,54],quaternari:247,twice:[116,232],upper:[128,222],qreaction:116,oepink:180,fzmayb:193,getfrag:[35,61,51],benzen:[173,247,232,235,66,13,129,83],addatom:[71,12],tohexstr:[100,166,228],oeparsesmart:[45,72,208,38],integr:[100,222,63],contain:[60,1,113,62,63,116,193,194,196,66,125,128,129,14,15,100,202,203,75,205,229,76,208,77,171,213,215,141,210,140,219,167,83,222,223,85,146,148,33,230,232,233,98,34,101,159,96,39,161,13,178,162,163,45,245,204,173,82,49,243,104,249,105,175,218,253,180,136,109,154],bayli:17,grab:128,oeisbinari:[72,38,232],view:222,conform:[72,17,186,204,135,257,231,232,52,98,230,241,233,140,128,167,222,224],arsen:100,oesequencealign:[72,61,55,222,120],setel:[68,166,197],smartslexreplac:[72,100,38],frame:222,knowledg:135,abort:232,oegeom2dsetlength:[72,3],displai:[159,13,83,98],elain:17,temporarili:167,oecurrenttim:[72,133],oebondbas:[114,20,8,119,9,195,124,12,126,127,129,251,130,71,72,204,18,135,6,22,23,201,139,217,140,108,222,118,151,232,233,178,238,38,219,158,45,165,99,246,102,186,54,177,254,250],rna:[100,208],becaus:[116,63,178,38,128,129,167,66],closer:208,asynchron:167,statu:173,uncharg:[247,231],eqcaliphaticon:[77,66],correctli:[230,208,231,232,233,98,141,24,58],record:[116,230,208,231,232,233,213,224],nuclear:213,getscor:[61,55],oeiflavor_xyz:161,oegaussiancontain:[72,166,246,190,172],oemdlqueryopts_suppressexplicith:[13,116],favor:167,written:[45,0,204,63,116,230,208,231,233,213,141,161,128,167,83,224],oegeom3dunitquaternionrot:[72,232,3],oeiscommonisotop:[72,230,159,38,222],eqdoubletripl:77,neither:[45,247,58],registri:[58,204],extbond:[83,105],oetypedparamet:[72,68,166,211,197],maxgridtyp:60,oecalccartesiancoord:[72,38,233,98],patholog:[100,208,230,98],oemediumgreen:180,shashidar:17,weak:[2,66],oebooltyp:174,setzdim:[143,16,209,166],oeinithandl:[72,38],mcguir:17,entir:[45,100,63,24,161,167,222,66],rare:[100,208,231,66,224],oemacromodelatomtyp:[72,38],disconnect:[116,173,98,161,129,58,224],exactbond:77,endm:215,embed:208,jon:17,addit:[45,0,204,135,208,231,232,233,235,141,38,161,128,129,167,222,66],cg1:223,setaromat:[186,6,119,52,238,127,130,71],relationship:128,oemempoolmode_singlethread:167,oemcstype_approxim:[141,66],dobb:17,oegethostnam:[72,100,133],sum:235,aircraft:213,cleardefault:[68,166,197],tau:1,chosen:[13,167,2],alkan:100,instanc:[45,116,100,161,230,208,128,66,219,140,13,222],"5mc":208,b1ccccc1:232,freeli:129,didact:222,comment:[231,232,233,141,66,140,130,224],oeqmolbas:[184,116,20,66,71,72,100,18,156,22,23,217,32,151,230,231,232,233,38,13,45,246,54,177],getunitcel:[65,166],makecopi:[22,177],oelightgrei:180,substruct:38,carbonyl:116,glitch:141,hyphen:208,paramvi:24,oeatomsetresidu:[72,38],solv:[13,208],johann:17,oeunaryfals:[244,72,166,212,182],commenc:116,respect:[45,0,100,161,116,230,208,232,233,178,213,66,128,140,219,129,130,224],zinc:58,oeperceiveresidu:[72,230,208,232,38,224],oehasbondstereohydrogen:[72,38],append:[116,135,230,21,161,140,219,167,242],nci:208,torsion:[208,162,222],quit:[45,167],oemethod:238,slowli:167,thiocyan:224,over_rid:174,oereadmopacfil:[72,38],addition:[0,100,231,141,66,128],decent:141,trademark:213,compos:[13,66],oefilerandomnam:[72,133],insuffici:231,compon:[0,116,49,72,232,98,129],oefindringatomsandbond:[72,230,208,98,235,38,129],newli:[128,230],hierarch:222,emul:116,seqadv:100,immedi:[38,66],partial:[72,100,17,63,247,231,52,235,233,58,224],setbooldata:[20,6,119,65,124,12,127,71,131,16,190,18,209,138,23,80,28,143,86,151,238,42,166,246,172,54],acyl:116,oeaddlicensekei:[72,133],presenc:13,oebasedatat:[72,166,240,147,38,57],c12c3c4c3c5c4c1c25:232,atomtypestr:49,oebwriteoebas:[72,174],c21:223,oematch:[72,230,9,254,233,55,71],togeth:[247,128,167,208,161],pdb1jj2:232,canonicalis:17,presens:224,present:[45,116,100,173,135,230,231,66,128,13,167,130],nmatch:66,homer:17,gardin:17,multi:[72,100,135,257,208,231,233,98,128,167,222],novel:17,oeiflavor_mol2h:161,subsetr:[222,224],plain:232,oesmiflag:[72,78,194],modelnam:130,oeoflavor_sdf:161,oeformalpartialcharg:[72,38],oepdboflag_formalcharg:222,defin:[116,63,66,128,130,204,135,161,167,224,231,232,233,235,159,38,219,241,13,45,173,247,238],oeissulfur:[244,72,107,71,241,182],dude:[72,208,128],glossari:[170,72],toluen:[100,66],ispolar:[238,6,71],backtrack:17,observ:[247,116],accompani:213,setfragmentnumb:[121,71],tensor2mat:222,layer:[45,72,128],purchas:213,oeistdstream:[88,231,187],getfragmentnumb:[121,61,71,48],oefuzzi:[72,206,233,38,139,71],site:[0,133,38,174],oeipstream:[88,187,222,234],oegraphmol:[116,20,66,128,129,130,71,72,100,204,18,257,208,141,140,161,167,151,231,233,178,38,219,13,45,173,174],motiv:0,molthread:167,dual:116,getdim:[131,16,63,209,166,65,138,80,28,143],incom:[128,232],revis:208,patti:[208,17,24],surprisingli:129,oebitvectornot:[72,174],parent:[45,166,186,204,135,230,232,52,211,128,129,224],geti:[131,16,86,209,166,138,28,42,143],outgrid:174,oebitvectorequ:[72,174],parti:167,getb:[166,149],vistoli:17,oestringtonumb:[72,224,174],swapaier:222,haigh:17,getg:[166,149],member:[45,116,222,230,208,231,233,178,128,13,129,130],python:[45,116,173,63,204,135,231,208,128,232,178,161,213,159,66,219,140,13,129,167,130],getz:[131,16,86,209,166,138,28,42,143],whenev:[140,231,129,141,230],ntarget:66,largest:[66,224],outbreak:213,failur:[100,208,232,233,98,66,222,224],inc:[247,116,213],errlevel:220,oemcsmaxatom:[72,195,108,66,71],oecolor:[72,166,149,174],smallest:[72,17,173,98,2,129],oegridmasktyp:[72,176,174,101],http:[116,167,17,170,38,13,58],raymond:[17,66],bali:17,again:[45,116,208,140,128,167],moleculepart:129,rfc:141,interrog:66,ref2:38,getmaxconfidx:[140,128,124,71,18],effect:[116,161,135,230,208,231,98,159,141,38,128,140,13,224],phe:1,oefixedmultigrid:[72,166,246,209,174,138,80,28],ion:[231,100,208,17],aconf:128,dealloc:[45,167,178],oegetpaulingvdwradiu:[72,159,38],iod:[1,231],mount:167,expand:233,keep:[45,116,247,222,204],oesetdefaultflavor:[72,38],oeformat_undefin:161,off:[116,100,141,66,98],seta:[166,149],ofd:21,"3due":100,com:[45,116,17,170,38,3,13,58],usual:[135,140,167,170,63],well:[63,135,233,141,38,161,140,128,222],seti:[166,42,86],versatil:17,antonio:17,thought:178,patternq:66,command:[72,173,257,208,232,98,161,167,222,224],setr:[166,149],interpol:231,oefileisfil:[72,133],oeosstream:[88,72,181,73,242],unusu:224,setx:[166,42,86],setz:[166,42,86],interconvert:170,unari:[231,233],distanc:[100,17],photocopi:213,excludeatom:38,less:[0,63,204,247,232,98,235,141,66,140,222],aliphat:[2,173,235,66,13,129,224],oetransbas:[72,132,46,207,89,11,12,71],fingerprint:141,oegetcrystalsymmetri:[72,120],obtain:[116,159,66,13,129,222],gonnet:[205,222],detail:[45,116,100,186,173,208,232,52,178,38,211,161,241,13,68,129,66],germanium:224,front:[135,72,213],select:[100,17,222],virtual:[116,231,17,233],oecopyarrai:[72,174],oemolbasetype_oeminimol:45,simultan:66,renam:[222,100,24,257],keton:116,begin:[135,116,231,186,224],web:167,implicithcount:77,now:[100,257,208,231,232,233,98,230,141,161,222,224],adp:[1,208],field:[116,100,204,135,208,231,232,233,98,247,141,222],oeiflavor_fasta:161,flee:100,nonminmax:233,point:[0,100,63,247,230,208,231,232,174,175,238,24,140,128,167,222],makefil:141,discuss:[45,128,247,173,161],script:[135,173],add:[116,100,173,135,232,233,252,141,3,128,167,222,71,224],divis:141,bibliographi:[72,17,130],nor:[45,213,58,247],skc:[218,215,105,78,222],c13:223,c12:223,c11:223,c10:223,oegetpsi:[72,120],setimplicithcount:[238,6,71,52],match:[116,2,66,71,72,100,208,22,217,140,224,244,230,231,232,233,98,38,13,45,170,177,182],setcommand:[68,166,197],candid:173,torvald:213,flood:224,dest:174,tfile:13,maxradian:38,oemmffatomtypenam:[72,38],oegetatomicsymbol:[116,72,159,38,219,140,13,129,130],sweep:[20,151,119,18,6,233,140,124,23,12,127,54,71,238],unimolecular:116,string_valu:68,realiz:[45,161,167],five:[13,129,208,66,130],know:[128,129],burden:116,press:17,recurs:[116,2,232,211],oeoflavor_mdl:161,name:[116,187,115,68,100,133,204,135,208,211,141,161,83,222,87,231,232,233,98,214,159,38,241,186,170,181,52,247,96],oewritecdxfil:[72,38,161],loss:[141,98],resid:[135,233],backbon:[208,222,233,224],lost:[232,224],trigon:219,c1c:[66,130],corpor:213,earch:66,pmask:105,genericmask:[215,105],zlib:[161,230],necessari:[140,128,167,231,222],yoshimasa:17,lose:[128,100,208,233],gm2:100,gm1:100,unsuccess:[116,100],soft:230,page:72,oebondgetsmallestrings:[72,129,38],oereadmdlfil:[72,100,231,98,38,161],revers:[208,178],oegeom3dcrossprod:[72,3],buggi:230,oesddatapair:[72,38,71,92],settext:[166,149],linux:[213,208,141,232,233],simpl:[45,100,63,235,38,129,163,83,222,66],oerandom:[72,100,228,166,199],monoisotop:38,getbooldata:[20,6,119,65,124,12,127,71,131,16,190,18,209,138,23,80,28,143,86,151,238,42,166,246,172,54],brian:17,daylight:[116,2,0,170,72,230,208,232,233,213,38,83,224],quinolin:235,"export":[135,130],oeatomisinproduct:[244,116,182],enantiom:170,home:222,oeoflavor_mol2_substructur:222,unreact:116,librari:[45,0,100,72,135,230,232,52,120,141,233,161,116,159,167,222,224],grd:[202,63],win32:233,cg2:223,oeperceivechir:[219,208,231,38,72],ccnc:116,lead:[208,141,140,129,167,222,224],leak:[257,167,208,233,232],avoid:[45,63,230,208,231,233,98,141,167],registermolparamet:[72,257,174],overlap:230,ci00058a007:17,oeperceivebondord:[72,100,257,232,235,38],leav:[116,230,63],oetripostyp:[72,136,78],sequenc:[0,38,222,161],oeformat_mol2h:[161,230,130],munk:17,nd2:223,oeabscanonicalconftest:[164,72,40,71,128],getnam:[166,6,52,121,238,197,211,68,83,71],mode:[116,100,0,72,174,141,66,167],encourag:135,numstr:174,grid1:174,peeknextmol:[71,137],liabil:213,oeformat_sdf:[161,130],include_default:174,journal:17,usag:[0,166,247,82,220,66,140,167,224],symlink:141,setisinr:52,doubli:58,host:[257,232],isn:[238,233,235,141,161,58,83],oewritealign:[72,120],although:[219,58,232,233,116],offset:[88,214,230,222,224],preferenti:98,gettag:[166,240,147,57,92,71],after:[45,0,100,173,116,208,233,178,141,66,161,140,13,167],simpler:135,atommap:[184,83,38,105],oemediumsalmon:180,about:[45,0,167,204,173,116,208,128,141,38,13,140,219,129,58,130],cambridgesoft:208,togglebit:[166,228],socket:233,oefalsetyp:174,column:[13,232,231,222,174],mmff:130,static_cast:38,oegeom2dnorm:[72,3],oemakemoleculargaussiangrid:[72,63,174],oecast:182,fccccbr:0,bridg:[129,66],constructor:[4,20,106,7,8,9,10,11,16,18,19,21,22,141,25,26,27,29,30,31,32,35,36,41,42,43,45,47,48,51,69,54,55,117,57,61,252,64,65,66,67,71,73,79,81,167,88,89,90,91,92,94,256,97,158,99,100,102,181,111,115,156,172,121,122,123,126,128,132,95,134,137,139,143,236,149,150,151,153,155,157,165,166,37,168,177,184,185,187,188,191,192,179,198,199,201,240,206,207,209,211,216,217,220,222,224,225,228,230,231,233,234,214,239,242,246,248,226,255,257],fals:[116,8,10,66,199,128,130,100,154,211,137,22,141,24,149,217,161,222,227,230,231,232,233,98,214,38,219,13,120,47,182],mv30:105,hypothet:116,izdim:[16,209],dithioic:208,"2cc":219,subset:[72,100,129,232,178],blind:17,symmetryclass:77,iumb:232,objectnam:25,automat:[116,17,204,173,72,257,208,232,161,38,128,219,129,83,130,224],oegetusernam:[72,133],oemcsfunc:[72,99,201,195,232,22,108,66,250,71,177],oeparsecommandlinelw:[72,174],refer:[45,72,173,116,135,230,98,247,159,66,219,140,13,178,222],getenergi:[204,20,151,18,124,54,12,128,23,71],inorgan:135,oeopstream:[88,21,181,222],van:[238,159,17,38],val:[1,68,63,174],rxnarrow:100,oemcssearch:[72,230,208,22,66,71],boundedcach:[15,167],rotat:[17,186,257,231,233,66,241,219,162,222],limit:[116,100,17,224,208,98,38,128,13,167,66],trigger:[230,232],pool:[167,208],glimmer:140,gthr:232,sp3d:62,hooft:17,ccp:63,individu:[116,128],oebwritetag:[72,174],organ:[17,38],"function":[116,120,66,128,129,130,72,100,133,204,135,257,208,24,140,219,167,83,222,224,230,231,232,233,98,235,159,38,3,161,241,13,178,45,173,170,174,247,58],eongrid:60,getlist:[166,208,211],interest:[13,58,173],unexpect:230,tflavor:13,basic:[45,116],oenul:210,continu:[100,208,141,66,219,224],unambigu:[170,116],neutral:[247,58,208],nrmatch:116,gain:[45,167,233],spuriou:[100,208],oeelementhistogram:[72,38],overflow:[100,222],highest:66,timese:[199,166],parsethread:167,count:[116,2,20,124,66,12,129,71,72,100,18,208,23,141,83,224,151,231,232,94,166,247,52,174,54,220,58],oeonc:[72,100,242,152],oegetpdbatomindex:[72,38],made:[45,100,2,161,230,208,231,232,233,128,219,167,222,224],wise:167,oesmilesflag_isomer:38,whether:[116,173,230,208,128,232,235,38,219,140,13,129,167,83,222],wish:[116,178],c1cnc:116,flip:[231,66],oemolbasetyp:[45,72,100,243,151,78,38],oegeom3dquaternioninvert:[72,3],directori:[173,135,232,141,167,222],below:[116,173,0,141,13,128],spatialcoordtoel:[131,16,209,166,138,28,143],ensur:[116,100,63,230,208,231,233,141,167],lingo:[141,17],getspac:[131,16,63,209,166,65,138,80,28,143],setminatom:[22,66,71,177],otherwis:[58,230,208,231,213,38,128,167],problem:[45,100,17,135,257,208,231,232,233,98,230,13,129,167,83,222,224],defaultatom:[77,66],cyanic:224,setoutputstream:[220,166],anthoni:17,eoh:1,oemacromodelatomtypenam:[72,38],evalu:[167,17,66,222],"int":[20,7,9,10,12,16,18,19,21,22,23,25,26,27,28,31,32,35,38,3,42,46,47,48,51,52,54,55,220,57,116,65,68,186,80,81,86,87,89,100,94,256,158,155,102,181,172,119,120,121,124,128,131,133,137,138,139,141,143,149,151,153,157,159,117,246,165,37,174,177,184,187,197,198,199,190,206,209,211,217,228,254,233,234,214,238,240,204],mask:222,dure:[116,170,257,178,66,13,222,224],setinr:[186,6,119,238,127,129,71],gethasvalu:[68,166,197],getcalphamatch:[61,55],setg:[166,149],twist:[45,72],novemb:17,cap:232,getfloatsset:233,circul:213,oeiflavor_pdb_t:161,oco2:136,pdb2ge:141,probabl:[141,24],oemempoolmode_system:167,cacodyl:100,morton:17,quot:[232,224],against:[116,167,232,224],gettagnam:174,minim:[45,167,178],oemdlqueryopts_reactionqueri:116,oegetatom:224,oefizzgrid:[232,233],oedeterminecompon:[140,72,129,38],arylhydroxylamin:222,undefin:[85,146,202,243,63,49,232,178,218,194,39,128,140,219,167,162,109,82],other:[116,63,66,128,204,135,257,208,213,141,24,140,161,167,83,222,224,228,230,231,232,233,178,38,219,247,58],lookup:[140,72],futur:[0,222],rememb:[140,128,66],varieti:161,oedeterminereact:[72,38],out:[45,116,100,204,63,213,222,231,233,98,161,235,66,178,128,140,219,167,130],oeisaromaticatom:[244,72,237,71,241,130,182],chemist:135,sidechain:[100,232],star:208,zhou:17,qfile:13,vega:17,addbondtopologyconstraint:125,gcc:[100,224],dva:100,c_enegexo:109,accomplish:[161,167],countbit:[166,228],oeparseparameterfil:[72,174],pi2:14,calloncefunc:133,"2izq":100,simon:17,experienc:[45,135,167,224],oegetpathlength:[72,38],peptid:[241,233,224],eof:[187,137,73,185,88,192,232,234,21,30,242,134,29,181,71],scientif:[100,173,213,170,208,235,141,24,140,13,58,83,130],setb:[166,149],reliabl:100,martin:17,oegettag:[72,167,174],rule:[72,100,167,17,208,66,140,58,130],bcc:141,portion:128,oemakegaussian:[72,174],tautom:[116,17,128],deletebond:[204,20,151,18,233,124,54,12,23,222,71],understand:[45,241,66],invari:[231,129,2,230,232],phosphat:208,getprefactor:[172,166,42,86,190],"8th":13},titles:["SMILES Line Notation","OEResidueIndex","SMARTS Pattern Matching","OEMath Functions","OEIsMember","OEIsPolarHydrogen","OEQAtomBase","OEInSamePart","OEIsRotor","OEMatch","oemolithread","OERotMatrix","OEConfBaseT","Substructure Search with MDL Queries","OEMath","OEMemPoolMode","OEGrid","Bibliography","OEMol","OEHasAtomicNum","OEQMol","oeofstream","OEMCSSearch","OEMolBase","OEChem 1.5.1","OEDots","OEIterBase","OEIter","OEGridBase","oeogzstream","oeiwrapperstream","OEHierResidue","OELibraryGen","OEElemNo","OEMOPACOFlag","OEHierView","OEHasPDBAtomIndex","OEIsRGroup","OEChem Functions","OEAtomStereo","OEConfTestBase","OENbrs","OEGaussian","OEThread","OEQBase","Design Decisions","OETransBase","oemolothread","OEHierFragment","OEProperty","OEIsPolar","OEHierChain","Atom Properties","OEBinaryPredicate","OEQMolBase","OESequenceAlignment","OEIsChiralAtom","OEBaseData","Valence Models","OEIsCarbon","OEGridType","OEBio Classes","OEHybridization","Scalar Grids","OEOr","OESkewGrid","Pattern Matching","OEMutex","OEParameter","OEIsomericConfTest","OEAtomIsInRing","OEChem Classes","OEChem Toolkit","oeosstream","OEDefaultConfTest","OEConst","OEProtTorType","OEExprOpts","OEChem Constants","OEHasChainID","OEGridAbstractBase","OEHasResidueNumber","OEErrorLevel","OESMILESFlag","OEIsHalide","OEQMolType","OEGaussianBase","oemolstreambase","oestream","OETrans","OEThreadLocal","OEBinaryAnd","OESDDataPair","OEIsOxygen","OEErrorHandlerImplBase","OELock","OESLNFlag","OEIsMemberPtr","OEChem  1.3.1","OEMCSMaxBondsCompleteCycles","OEChem 1.7.0","OEGridMaskType","OEHasOrder","OEIsAlphaCarbon","OEAssumption","OEOFlavor","OECondition","OEIsSulfur","OEMCSMaxAtoms","OEAroType","OEBio Constants","OENot","OEIsNitrogen","OESmartsParseOpts","OEBondIsInRing","OEHasAtomName","Reactions","OENearestNbrs","OEIsAromaticBond","OEBondBase","OEBio Functions","OEResidue","OEBinaryNot","OETryMutex","OEMCMolBaseT","OEMDLQueryOpts","OEGetNbrAtom","OEQBondBase","Multi-conformer Molecules","Ring Perception","Aromaticity Perception","OEFixedGrid","OEQuaternion","OEPlatform Functions","oeowrapperstream","Introduction","OETriposType","oemolistream","OEFixedMultiGrid","OEExprBase","Atom, Bond, and Conformer Indices","OEChem 1.5.0","OEMath Constants","OEScalarGrid","OEIsHeavy","OEIsPhosphorus","OEBondStereo","OEBaseDataTPtr","OENearestNbrsMethod","OEColor","OEMatchPair","OEGraphMol","OEOnce","OEPartPredT","OEFuzzVal","OEHasFragmentNumber","OEUniMolecularRxn","OEHasMapIdx","OEHasIdx","Periodic Table Functions","oemolthreadbase","Molecule Reading and Writing","OEMCMolType","OEParamVisibility","OEAbsCanonicalConfTest","OEHasBondStereoSpecified","OESystem Classes","Multi-Threading","OECoordArray","OEPlatform Constants","Glossary","OEAnnotationPrimitive","OEGaussianContainer","Molecules","OESystem Functions","OEAnnotationRenderHint","OESystem Constants","OECliqueSearch","Atom and Bond Traversal","OEIsBackboneAtom","OESystem","oeostream","OEUnaryFunction","OEIsCAlpha","OEMatchFunc","oeigzstream","Bond Properties","oeistream","OEStopwatch","OEIsHydrogen","OEGaussianContainerBase","OEWallTimer","oeisstream","OEChem","OESmiFlag","OEMCSFunc","OEPreserveResInfo","OETypedParameter","OEHasAtomStereoSpecified","OERandom","OEIsHalogen","OEMCSMaxAtomsCompleteCycles","OEGridFileType","OEMCSType","Molecule Properties","OESeqAlignmentMethod","OEFuzzy","OETranslation","OEChem 1.6.0","OEMultiGrid","OEPlatform","OEInterface","OEUnaryFalse","Front Matter","oemolostream","OEIFlavor","OEBoundedBuffer","OESubSearch","OEFormat","Stereochemistry Perception","OEErrorHandler","OEChem 1.4.1","OEChem 1.4.0","OEPDBAtomName","OEChem 1.4.2","OEAbsoluteConfTest","OEAtomIsInResidue","OEBinaryFunction","OEBitVector","OEMModType","OEChem 1.3.4","OEChem 1.3.2","OEChem 1.3.3","OEChem 1.3.0","oeifstream","Connectivity Perception","OEAnd","OEIsAromaticAtom","OEAtomBase","OEProtectedBuffer","OEBaseDataT","Predicate Functors","OEPlatform Classes","OEMolBaseType","OEUnaryPredicate","OEWriteMolReturnCode","OEBase","Formal and Partial Charges","OEBinaryOr","OEPerceived","OEMCSMaxBonds","OEIsChiralBond","OEVectorBindings","OERxnRole","OEMatchBase","OELingoSim","OENthAtom","OEChem 1.6.1","OEBinaryFalse"],modules:{},descrefs:{},filenames:["SMILES","OEChemConstants/OEResidueIndex","SMARTS","OEMathFunctions","OEChemClasses/OEIsMember","OEChemClasses/OEIsPolarHydrogen","OEChemClasses/OEQAtomBase","OEChemClasses/OEInSamePart","OEChemClasses/OEIsRotor","OEChemClasses/OEMatch","OEChemClasses/oemolithread","OEChemClasses/OERotMatrix","OEChemClasses/OEConfBaseT","mdlqueries","OEMathConstants/OEMath","OESystemConstants/OEMemPoolMode","OESystemClasses/OEGrid","bibliography","OEChemClasses/OEMol","OEChemClasses/OEHasAtomicNum","OEChemClasses/OEQMol","OEPlatformClasses/oeofstream","OEChemClasses/OEMCSSearch","OEChemClasses/OEMolBase","releasenotes/version1_5_1","OESystemClasses/OEDots","OESystemClasses/OEIterBase","OESystemClasses/OEIter","OESystemClasses/OEGridBase","OEPlatformClasses/oeogzstream","OEPlatformClasses/oeiwrapperstream","OEBioClasses/OEHierResidue","OEChemClasses/OELibraryGen","OEChemConstants/OEElemNo","OEChemConstants/OEMOPACOFlag","OEBioClasses/OEHierView","OEBioClasses/OEHasPDBAtomIndex","OEChemClasses/OEIsRGroup","OEChemFunctions","OEChemConstants/OEAtomStereo","OEChemClasses/OEConfTestBase","OEChemClasses/OENbrs","OESystemClasses/OEGaussian","OEPlatformClasses/OEThread","OEChemClasses/OEQBase","designdecisions","OEChemClasses/OETransBase","OEChemClasses/oemolothread","OEBioClasses/OEHierFragment","OEChemConstants/OEProperty","OEChemClasses/OEIsPolar","OEBioClasses/OEHierChain","atomproperties","OESystemClasses/OEBinaryPredicate","OEChemClasses/OEQMolBase","OEBioClasses/OESequenceAlignment","OEChemClasses/OEIsChiralAtom","OESystemClasses/OEBaseData","valence","OEChemClasses/OEIsCarbon","OESystemConstants/OEGridType","OEBioClasses/OEBioClasses","OEChemConstants/OEHybridization","grids","OESystemClasses/OEOr","OESystemClasses/OESkewGrid","patternmatch","OEPlatformClasses/OEMutex","OESystemClasses/OEParameter","OEChemClasses/OEIsomericConfTest","OEChemClasses/OEAtomIsInRing","OEChemClasses/OEChemClasses","index","OEPlatformClasses/oeosstream","OEChemClasses/OEDefaultConfTest","OEMathConstants/OEConst","OEBioConstants/OEProtTorType","OEChemConstants/OEExprOpts","OEChemConstants/OEChemConstants","OEChemClasses/OEHasChainID","OESystemClasses/OEGridAbstractBase","OEChemClasses/OEHasResidueNumber","OESystemConstants/OEErrorLevel","OEChemConstants/OESMILESFlag","OEChemClasses/OEIsHalide","OEChemConstants/OEQMolType","OESystemClasses/OEGaussianBase","OEChemClasses/oemolstreambase","OEPlatformClasses/oestream","OEChemClasses/OETrans","OEPlatformClasses/OEThreadLocal","OESystemClasses/OEBinaryAnd","OEChemClasses/OESDDataPair","OEChemClasses/OEIsOxygen","OESystemClasses/OEErrorHandlerImplBase","OEPlatformClasses/OELock","OEChemConstants/OESLNFlag","OEChemClasses/OEIsMemberPtr","releasenotes/version1_3_1","OEChemClasses/OEMCSMaxBondsCompleteCycles","releasenotes/version1_7_0","OESystemConstants/OEGridMaskType","OEChemClasses/OEHasOrder","OEBioClasses/OEIsAlphaCarbon","OEBioConstants/OEAssumption","OEChemConstants/OEOFlavor","OEPlatformClasses/OECondition","OEChemClasses/OEIsSulfur","OEChemClasses/OEMCSMaxAtoms","OEChemConstants/OEAroType","OEBioConstants/OEBioConstants","OESystemClasses/OENot","OEChemClasses/OEIsNitrogen","OEChemConstants/OESmartsParseOpts","OEChemClasses/OEBondIsInRing","OEChemClasses/OEHasAtomName","reactions","OEChemClasses/OENearestNbrs","OEChemClasses/OEIsAromaticBond","OEChemClasses/OEBondBase","OEBioFunctions","OEChemClasses/OEResidue","OESystemClasses/OEBinaryNot","OEPlatformClasses/OETryMutex","OEChemClasses/OEMCMolBaseT","OEChemConstants/OEMDLQueryOpts","OEChemClasses/OEGetNbrAtom","OEChemClasses/OEQBondBase","oemol","ring","aromaticity","OESystemClasses/OEFixedGrid","OEChemClasses/OEQuaternion","OEPlatformFunctions","OEPlatformClasses/oeowrapperstream","introduction","OEChemConstants/OETriposType","OEChemClasses/oemolistream","OESystemClasses/OEFixedMultiGrid","OEChemClasses/OEExprBase","atombondindices","releasenotes/version1_5_0","OEMathConstants/OEMathConstants","OESystemClasses/OEScalarGrid","OEChemClasses/OEIsHeavy","OEChemClasses/OEIsPhosphorus","OEChemConstants/OEBondStereo","OESystemClasses/OEBaseDataTPtr","OEChemConstants/OENearestNbrsMethod","OESystemClasses/OEColor","OEChemClasses/OEMatchPair","OEChemClasses/OEGraphMol","OEPlatformClasses/OEOnce","OEChemClasses/OEPartPredT","OEChemConstants/OEFuzzVal","OEChemClasses/OEHasFragmentNumber","OEChemClasses/OEUniMolecularRxn","OEChemClasses/OEHasMapIdx","OEChemClasses/OEHasIdx","periodictable","OEChemClasses/oemolthreadbase","molreadwrite","OEChemConstants/OEMCMolType","OESystemConstants/OEParamVisibility","OEChemClasses/OEAbsCanonicalConfTest","OEChemClasses/OEHasBondStereoSpecified","OESystemClasses/OESystemClasses","multithreading","OEChemClasses/OECoordArray","OEPlatformConstants/OEPlatformConstants","glossary","OESystemConstants/OEAnnotationPrimitive","OESystemClasses/OEGaussianContainer","molctordtor","OESystemFunctions","OESystemConstants/OEAnnotationRenderHint","OESystemConstants/OESystemConstants","OEChemClasses/OECliqueSearch","atombondtraversal","OEBioClasses/OEIsBackboneAtom","OESystemConstants/OESystem","OEPlatformClasses/oeostream","OESystemClasses/OEUnaryFunction","OEChemClasses/OEIsCAlpha","OEChemClasses/OEMatchFunc","OEPlatformClasses/oeigzstream","bondproperties","OEPlatformClasses/oeistream","OESystemClasses/OEStopwatch","OEChemClasses/OEIsHydrogen","OESystemClasses/OEGaussianContainerBase","OESystemClasses/OEWallTimer","OEPlatformClasses/oeisstream","OEChemConstants/OEChem","OEChemConstants/OESmiFlag","OEChemClasses/OEMCSFunc","OEChemConstants/OEPreserveResInfo","OESystemClasses/OETypedParameter","OEChemClasses/OEHasAtomStereoSpecified","OESystemClasses/OERandom","OEChemClasses/OEIsHalogen","OEChemClasses/OEMCSMaxAtomsCompleteCycles","OESystemConstants/OEGridFileType","OEChemConstants/OEMCSType","molproperties","OEBioConstants/OESeqAlignmentMethod","OEChemClasses/OEFuzzy","OEChemClasses/OETranslation","releasenotes/version1_6_0","OESystemClasses/OEMultiGrid","OEPlatformConstants/OEPlatform","OESystemClasses/OEInterface","OESystemClasses/OEUnaryFalse","frontmatter","OEChemClasses/oemolostream","OEChemConstants/OEIFlavor","OESystemClasses/OEBoundedBuffer","OEChemClasses/OESubSearch","OEChemConstants/OEFormat","stereochemistry","OESystemClasses/OEErrorHandler","releasenotes/version1_4_1","releasenotes/version1_4_0","OEChemConstants/OEPDBAtomName","releasenotes/version1_4_2","OEChemClasses/OEAbsoluteConfTest","OEChemClasses/OEAtomIsInResidue","OESystemClasses/OEBinaryFunction","OESystemClasses/OEBitVector","OEChemConstants/OEMModType","releasenotes/version1_3_4","releasenotes/version1_3_2","releasenotes/version1_3_3","releasenotes/version1_3_0","OEPlatformClasses/oeifstream","connectivity","OESystemClasses/OEAnd","OEChemClasses/OEIsAromaticAtom","OEChemClasses/OEAtomBase","OESystemClasses/OEProtectedBuffer","OESystemClasses/OEBaseDataT","predicates","OEPlatformClasses/OEPlatformClasses","OEChemConstants/OEMolBaseType","OESystemClasses/OEUnaryPredicate","OEChemConstants/OEWriteMolReturnCode","OESystemClasses/OEBase","charges","OESystemClasses/OEBinaryOr","OEChemConstants/OEPerceived","OEChemClasses/OEMCSMaxBonds","OEChemClasses/OEIsChiralBond","OEChemClasses/OEVectorBindings","OEChemConstants/OERxnRole","OEChemClasses/OEMatchBase","OEChemClasses/OELingoSim","OEChemClasses/OENthAtom","releasenotes/version1_6_1","OESystemClasses/OEBinaryFalse"]})