Lexichem 1.6
- On a benchmark of 250251 compounds in the NCI00 database, mol2nam
is able to convert 233010 structures (93.11%) to names without BLAH.
Of these 233010 names, nam2mol is able to convert 221331 (94.99%)
back into structures.
- This release includes a significant number of improvements to both
name generation and name parsing. For example, both name generation and
parsing now do a much better job on ring fusion nomenclature, for names
like ‘5,6,7,8-tetrahydro[1,2,4]triazolo[4,3-a]pyridine‘. There’s
also much improved handling of charged ring systems. The name parsing
conversion rate for the 71367 compound names in the 2003 Maybridge
catalog is now 93.25% in v1.6, up from 80.80% in v1.5.
- In name generation, new naming styles have been added for MDL/Beilstein
AutoNom style names, for CAS permuted index style names (and there are
new placeholder styles for IUPAC79 and IUPAC93 naming). A large
number of improvements have been made to names generated using the
‘traditional’ naming style. A new OECapitalizeName
API function is available to capitalizing the appropriate first letter
of a generated name, such as ‘p-tert-Butylbenzoic acid‘.
- Several bug fixes have been made to the Cahn-Ingold-Prelog (CIP)
chirality perception implementation.
- The OEParseIUPACName function is now able return supplementary
locant annotations for each atom. This function now stores an integer
locant code/identifier in the integer atom type field of each atom, which
may be retrieved using the OEAtomBase::GetIntType method
and converted into a readable/displayable string using the recently
exposed OENameLocant function. This functionality is
a recent addition (obviously), and most but not all supported ring systems
and parents have locant annotations in this initial release.
- Finally, for the adventurous, new APIs for translating compound names
from foreign languages into English are available as the experimental
OEFromJapanese, OEFromSwedish and
OEFromSpanish functions.
Additionally, a OEFromUTF8 function is available for
converting UTF-8 encoded strings into the escaped sequences expected by
these functions (effectively the inverse of OEToUTF8).