FLYNN

Previous: 2.4 Refinement Dictionaries Up: FLYNN Next: 3. Using Flynn

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2 Applications

• 3. Using Flynn
  • 3.1 Command Line Interface
    • 3.1.1 Required Parameters
    • 3.1.2 Molecular File Formats
    • 3.1.3 Map File Formats
    • 3.1.4 Basic Parameters
    • 3.1.5 MTZ File parameters
    • 3.1.6 Advanced Parameters
    • 3.1.7 3D Construction Parameters and Torsion Driving Parameters
  • 3.2 Example Executions
  • 3.3 Results on The Gold Test Set
• 4. Using Writedict
  • 4.1 Command Line Interface
    • 4.1.1 Required Parameters
    • 4.1.2 Output Options
  • 4.2 Example Executions
• 5. Using Aligngrid
  • 5.1 Command Line Interface
    • 5.1.1 Required Parameters
    • 5.1.2 Advanced Options
    • 5.1.3 MTZ File Parameters
  • 5.2 Example Executions
• 6. Integration with Coot
  • 6.1 Overview
  • 6.2 Using Flynn
    • 6.2.1 Advanced Options
  • 6.3 Using WriteDict
    • 6.3.1 Advanced Options
  • 6.4 Installing Coot Interface
  • 6.5 Installing WinCoot Interface
  • 6.6 Flynn Takes Forever!
• 7. Release Notes
  • 7.1 flynn
  • 7.2 flynn - coot interface
  • 7.3 writedict
  • 7.4 writedict - coot interface
  • 7.5 aligngrid

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				FLYNN

Previous: 2.4 Refinement Dictionaries Up: FLYNN Next: 3. Using Flynn

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Documentation released on July 24, 2008.