3.2 Command Line Options

-ascii: Encode the output using 7-bit ASCII, converting accented characters to their unaccented forms.
-autonom: Attempt to generate MDL/Beilstein AutoNom-like names. By default, mol2nam uses the OpenEye name style. MDL's AutoNom normally generates capitalized names, which can be controlled via the -capitalize command line option.
-capitalize: Capitalize the appropriate letter of the generated name.
-cas: Attempt to generate CAS-like names, as used by the Chemical Abstracts Service (CAS). By default, mol2nam uses the OpenEye name style.
-casidx: Attempt to generate CAS permuted index-like names, as used by the Chemical Abstracts Service (CAS). By default, mol2nam uses the OpenEye name style.
-de: Generate German compound names.
-delim: By default, the connection tables written to the output file have their title replaced with the generated compound name. However, if the -delim option is given followed by a delimiter string, the name is appended to the original title separated by the specified delimiter.
-es: Generate Spanish compound names.
-eucjp: Encode the output using EUC-JP to represent Japanese characters. This is normally used in conjunction with the -jp command line option.
-fr: Generate French compound names.
-html: Encode the output using HTML markup to represent greek characters, foreign characters and superscripts.
-it: Generate Italian compound names.
-iupac: Attempt to generate the Preferred IUPAC Name (PIN) of a compound as defined by the IUPAC200x standard. By default, mol2nam uses the OpenEye name style.
-iupac79: Attempt to generate an IUPAC 1979-style name. By default, mol2nam uses the OpenEye name style.
-iupac93: Attempt to generate an IUPAC 1993-style name. By default, mol2nam uses the OpenEye name style.
-ja: Generate Japanese compound names. See also the -sjis and -eucjp command line options.
-jp: A synonym for -ja.
-nl: Generate Dutch compound names.
-tag: When the output file is to be written in MDL SD file format, also write the compound name in the specified data tag.
-traditional: Attempt to generate traditional, common or archaic names for a compound. By default, mol2nam uses the OpenEye name style.
-pl: Generate Polish compound names.
-se: A synonym for -sv.
-sv: Generate Swedish compound names.
-sjis: Encode the output using Shift-JIS to represent Japanese characters. This is normally used in conjunction with the -jp command line option.
-systematic: Attempt to generate (fully) systematic names. By default, mol2nam uses the OpenEye name style.
-uk: Generate compound names with British spelling.
-utf8: Encode the output using UTF-8.

				Lexichem Chemical Name to Structure and Structure to Name Conversion