B.8 Ogham v1.0, June 2005

  1. Ability to ``freeze'' or specify the layout of a substructure of a molecule and request that Ogham layout the rest of the molecule. This use useful for preserving the orientation of the cores of combinatorial libraries or the matching atoms of a substructure search.

  2. Add support for specifying substitution preferences via the ring template library.

  3. Increased ring template dictionary, including both style and orientation preferences. Additionally, a number of existing ring templates have been enhanced with substitution preferences.

  4. Improved crinkling of acyclic chain systems.

  5. New clash resolution protocol that allows stretching of acyclic bonds between two ring systems.

  6. The bond lengths of bonds to non-depiction hydrogens has now been reduced to one half, to avoid cluttering depictions that include explicit hydrogens.

  7. Improvements to the documentation and minor bug fixes.