Index


a | c | f | g | h | i | l | m | n | o | p | s | t | v | w

A

Accessible vs Molecular
Associative Data
Attached to Molecules


C

Clear
OESurface
ClearVertexClique
OESurface
Cliques
Constructors
OESurface
CreateCopy
OESurface


F

Formats


G

Generation of Surfaces
GetAtoms
OESurface
GetAtomsElement
OESurface
GetColor
OESurface
GetColorElement
OESurface
GetCurvature
OESurface
GetCurvatureElement
OESurface
GetDataType
OESurface
GetDistance
OESurface
GetDistanceElement
OESurface
GetFaceNormals
OESurface
GetFaceNormalsElement
OESurface
GetNormals
OESurface
GetNormalsElement
OESurface
GetNumTriangles
OESurface
GetNumVertices
OESurface
GetPotential
OESurface
GetPotentialElement
OESurface
GetPotentialName
OESurface
GetResolution
OESurface
GetTitle
OESurface
GetTriangles
OESurface
GetTrianglesElement
OESurface
GetVertexClique
OESurface
GetVertexCliqueElement
OESurface
GetVertices
OESurface
GetVerticesElement
OESurface
Grids, [Link]


H

History
How to Read this Manual


I

Implementation Classes
IsAtomsSet
OESurface
IsColorSet
OESurface
IsCurvatureSet
OESurface
IsDataType
OESurface
IsDistanceSet
OESurface
IsFaceNormalsSet
OESurface
IsNormalsSet
OESurface
IsPotentialSet
OESurface
IsVertexCliqueSet
OESurface


L

Largest Hydrophobic Patch


M

Manipulation
Molecular Volume Overlap


N

Normal Vectors


O

OEAddSurfaces
OECalculateFaceNormals
OECalculateNormals
OECalculateSurfaceCurvature
OECalculateTriangleAreas
OEGetCenterAndExtents
OEGetSurfaceFileType
OEGetSurfaceFormatExtension
OEGetSurfaceFormatString
OEInitSurfaceHandlers
OEInvertSurface
OEIsReadableSurface
OEIsWriteableSurface
OEMakeAccessibleSurface
OEMakeBoxSurface
OEMakeCavitySurfaces
OEMakeCliqueSurface
OEMakeComplexCavities
OEMakeConnectedSurfaceCliques
OEMakeEllipsoidSurface
OEMakeGridFromSurface
OEMakeMolecularSurface
OEMakeSphericalSurface
OEMakeSurfaceFromGrid
OEMakeVoidVolume
OEReadSurface
OESetSurfaceColor
OESetSurfacePotentials
OESpicoliGetRelease
OESpicoliGetVersion
OESpicoliIsLicensed
OESurface
Clear
ClearVertexClique
Constructors
CreateCopy
GetAtoms
GetAtomsElement
GetColor
GetColorElement
GetCurvature
GetCurvatureElement
GetDataType
GetDistance
GetDistanceElement
GetFaceNormals
GetFaceNormalsElement
GetNormals
GetNormalsElement
GetNumTriangles
GetNumVertices
GetPotential
GetPotentialElement
GetPotentialName
GetResolution
GetTitle
OESurface (continued)
GetTriangles
GetTrianglesElement
GetVertexClique
GetVertexCliqueElement
GetVertices
GetVerticesElement
IsAtomsSet
IsColorSet
IsCurvatureSet
IsDataType
IsDistanceSet
IsFaceNormalsSet
IsNormalsSet
IsPotentialSet
IsVertexCliqueSet
operator bool
operator+=
operator=
SetAtoms
SetAtomsElement
SetColor
SetColorElement
SetCurvature
SetCurvatureElement
SetDistance
SetDistanceElement
SetFaceNormals
SetFaceNormalsElement
SetNormals
SetNormalsElement
SetNumTriangles
SetNumVertices
SetPotential
SetPotentialElement
SetPotentialName
SetTitle
SetTriangles
SetTrianglesElement
SetVertexClique
SetVertexCliqueElement
SetVertices
SetVerticesElement
OESurfaceArea
OESurfaceCliqueArea
OESurfaceCliqueCentroid
OESurfaceCliqueVolume
OESurfaceCropToClique
OESurfaceFileType
OESurfaceIsOpen
OESurfaceToMoleculeDistance
OESurfaceVolume
OEVoxelizeMethod
OEWriteSurface
operator bool
OESurface
operator+=
OESurface
operator=
OESurface


P

Polar Surface Area


S

SetAtoms
OESurface
SetAtomsElement
OESurface
SetColor
OESurface
SetColorElement
OESurface
SetCurvature
OESurface
SetCurvatureElement
OESurface
SetDistance
OESurface
SetDistanceElement
OESurface
SetFaceNormals
OESurface
SetFaceNormalsElement
OESurface
SetNormals
OESurface
SetNormalsElement
OESurface
SetNumTriangles
OESurface
SetNumVertices
OESurface
SetPotential
OESurface
SetPotentialElement
OESurface
SetPotentialName
OESurface
SetTitle
OESurface
SetTriangles
OESurface
SetTrianglesElement
OESurface
SetVertexClique
OESurface
SetVertexCliqueElement
OESurface
SetVertices
OESurface
SetVerticesElement
OESurface
Specific Data
Storage
Subsets
Surfaces


T

Triangles


V

Vertices


W

What You Should Already Know