VIDA User Manual

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5. 3D Display

The 3D display is the primary visualization interface available to the user (although it is not the only one). The purpose of the 3D display is to allow the user to view and interact with molecules (see Section 5.9), grids (see Section 5.10), and surfaces (see Section 5.11).

• 5.1 User Interaction
  • 5.1.1 Mouse
    • 5.1.1.1 Selection
    • 5.1.1.2 Rotation
    • 5.1.1.3 Translation
    • 5.1.1.4 Scale/Zoom
    • 5.1.1.5 Text Scale
    • 5.1.1.6 Clipping
    • 5.1.1.7 Contour Level
    • 5.1.1.8 Label
    • 5.1.1.9 Menu
  • 5.1.2 Style Control
    • 5.1.2.1 Color
    • 5.1.2.2 Selection
    • 5.1.2.3 Style
    • 5.1.2.4 Contours
    • 5.1.2.5 Graphics
    • 5.1.2.6 Custom Views
• 5.2 Rendering
• 5.3 Stereo
  • 5.3.1 Microsoft Windows
  • 5.3.2 Mac OS X
  • 5.3.3 UNIX/Linux
• 5.4 Viewpoint
• 5.5 Bookmarks
• 5.6 Tiled Display
• 5.7 Toolbars
  • 5.7.1 Style Toolbar
  • 5.7.2 Mouse Toolbar
  • 5.7.3 Application Toolbar
• 5.8 Display Widgets
  • 5.8.1 Annotation
  • 5.8.2 Bookmark
  • 5.8.3 Data Display
  • 5.8.4 Depiction Widget
• 5.9 Molecular Visualization
  • 5.9.1 Display Styles
  • 5.9.2 Color
    • 5.9.2.1 Amino
    • 5.9.2.2 BFactor
    • 5.9.2.3 Carbon
    • 5.9.2.4 Chain
    • 5.9.2.5 CPK, CPKNew
    • 5.9.2.6 Element
    • 5.9.2.7 Formal Charge
    • 5.9.2.8 Group
    • 5.9.2.9 Partial Charge
    • 5.9.2.10 Reference
    • 5.9.2.11 Residue
    • 5.9.2.12 Shapely
  • 5.9.3 Proteins
  • 5.9.4 Monitors
  • 5.9.5 Hydrogen Bonds
• 5.10 Grid Visualization
  • 5.10.1 Grid Types
    • 5.10.1.1 Electrostatic
    • 5.10.1.2 ET
    • 5.10.1.3 FRED
    • 5.10.1.4 Generic
  • 5.10.2 Reentrant Grids
• 5.11 Surface Visualization
  • 5.11.1 Display Styles
  • 5.11.2 Color
    • 5.11.2.1 Atom Color
    • 5.11.2.2 Concavity
    • 5.11.2.3 Curvature
    • 5.11.2.4 Distance
    • 5.11.2.5 Electrostatics
    • 5.11.2.6 Grid
    • 5.11.2.7 Hydrogen Bond Potential
    • 5.11.2.8 Hydrophobicity
    • 5.11.2.9 Surface Potential
  • 5.11.3 Selection
• 5.12 Custom Views
  • 5.12.1 FRED View
  • 5.12.2 EON View
  • 5.12.3 ROCS View

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				VIDA User Manual

Previous: 4.6 Drag and Drop Up: VIDA User Manual Next: 5.1 User Interaction

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Documentation released on 23 May 2007.