POSIT

• Front Matter
• Installation and Platform Notes
  • Licenses
  • Installation
    • General Installation
    • Linux/Unix
    • Windows
    • Mac OS X
  • Uninstallation
    • Linux/Unix
    • Windows
    • Mac OS X
• Introduction
  • Using the Bound Ligand

POSIT Theory

• Theory
  • TanimotoCombo
  • Optimization
  • POSIT Cross Docking Results
  • Predicting the Quality of the Pose
  • A Note About Strain
  • Additional Contraints (MCS)

Application

• Usage
  • Concerning Clashing Poses
• MAKE_POSE_RECEPTOR Usage
  • Command Line Interface
    • Required Parameters
    • Optional Parameters
  • Example Commands
• COMBINE_RECEPTORS Usage
  • Command Line Interface
    • Required Parameters
    • Optional Parameters
  • Example Commands
• POSIT Usage
  • Command Line Interface
    • Required Parameters
    • POSIT Output
    • Optional Parameters
  • Example Commands
    • Basic Usage
    • Ignoring Nitrogen Stereo
    • Advanced Usage

Release Notes

• Release Notes

Bibliography

• Bibliography