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VIDA, v4.1
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VIDA
ΒΆ
Front Matter
Installation and Platform Notes
Licenses
Installation
General Installation
Linux/Unix
Windows
Mac OS X
Removal
Linux/Unix
Windows
Mac OS X
Introduction
General Concepts
Focused State
Visible State
Locked State
Marked State
Selected State
Scope
Layout
Main Window
Peripheral Windows
Undo / Redo
Mouse Map
Special Builder Mouse Actions
User Directory
Help
About
File I/O
Opening Files
Molecules
Grids
Surfaces
State Files
Python Scripts
Closing Files
Saving Files
Molecules
Grids
Surfaces
State Files
Importing Files
Exporting Files
Data
Images
Python
Drag and Drop
Copy and Paste
3D Display
User Interaction
Mouse
Selection
Style Control
Rendering
Stereo
Microsoft Windows
Mac OS X
Viewpoint
Bookmarks
Tiled Display
Toolbars
Style Toolbar
Mouse Toolbar
Bottom Toolbar
Right Toolbar
Application Toolbar
Display Widgets
Annotation
Bookmark
Data Display
Depiction Widget
Molecular Visualization
Display Styles
Molecule Color
Proteins
Monitors
Hydrogen Bonds
Grid Visualization
Grid Types
Electrostatic
ET
FRED
Generic
Reentrant Grids
Surface Visualization
Display Styles
Surface Color
Selection
Symmetry
Symmetry Menu
2D Display
Preview vs. Viewer
Interaction
Spreadsheet
Basic Usage
Sorting
Displaying Data
Organizing Columns
Creating New Columns
Math Functions
OEChem Functions
Filtering
Statistics
Formatting Columns
Importing/Exporting
Importing
Exporting
Atom Spreadsheet
Residue Spreadsheet
List Management
Introduction
Browsing
Views
List Columns
List Manipulation
Creating Lists
Deleting from Lists
Molecule Manipulation
Creating Molecules
Editing Molecules
Independent Rotation/Translation of Molecules
Minimization
Monitors
Custom Views
FRED View
EON View
ROCS View
Selection Language
Introduction
Operators
Lists and Ranges
Properties
Macros/Pre-defined sets
Scripting with ScratchScope
Scripting
Journal File
Startup File
Scripts Directory
Scripting API
Scripting Window
OpenEye Toolkits
OEChemLite
Customizing the User Interface
PythonQt
PyQt
Extensions
Example Extensions
Extension Manager
Add Extensions
Current Extensions
Updating Extensions
Creating Extensions
The OEVidaExtension Base Class
Details for Using the OEVidaExtension Class
Extension Preferences
Notification Methods
Distributing Extensions
Preferences
Examples
Data
Scripts
add_menu.vpy
add_menu_item.vpy
add_menu_updating.vpy
add_toolbar_button.vpy
add_toolbar_toggle.vpy
calc_et.vpy
calculate_clashes.vpy
cluster_browsing.vpy
docking_view.vpy
export_vivant.vpy
fix_file_omega.vpy
load_and_split_pdb.vpy
molecule_alignment.vpy
open_from_pdb.vpy
override_open_1.vpy
override_open_2.vpy
search_chemspider.vpy
search_pubchem.vpy
simple_pyqt.vpy
simple_pythonqt.vpy
void_volumes.vpy
Menus
File
Open
Open State
Open Special
Clear
Clear All
Save
Save Marked
Save State
New List
New Molecule
Import
Export
Recents
Exit
Edit
Undo
Undo History
Redo
Redo History
Copy
Copy Image
Paste
Select
Mark
Hide
Find
Find on Disk
Clear Scripting Log
Extensions
Preferences
View
Fullscreen
Data
Sort Spreadsheet
Filter Spreadsheet
Create Column
Create Empty Column
Format Columns
Organize Columns
Show Statistics
Style
Color
Selection
Display
Graphics
Symmetry
Bookmarks
Add
Organize
Animated
Tools
FRED View
EON View
ROCS View
Window
Main Window
2D Preview
2D Viewer
3D Viewer
List Window
Process Manager
Scripting Window
Spreadsheet
Style Control
Help
About
Documentation
License
Open Examples Directory
Open User Directory
File Bug Report
Release Notes
VIDA v4.1.1 (
November 2011
)
New Features
Major Bug Fixes
Minor Bug Fixes
VIDA v4.1.0 (
August 2011
)
New Features
Major Bug Fixes
Minor Bug Fixes
Platform support
VIDA v4.0.3 (
June 2010
)
Improvements
Major Bug Fixes
Minor Bug Fixes
VIDA v4.0.2
VIDA v4.0.1
VIDA v4.0.0 (
August 2009
)
New Features
Improvements
Major Bug Fixes
Minor Bug Fixes
VIDA v3.0.0
New Features
Improvements
Major Bug Fixes
Minor Bug Fixes
VIDA v2.1.2
New Features
Improvements
Major Bug Fixes
Minor Bug Fixes
VIDA v2.1.1
Improvements
Major Bug Fixes
Minor Bug Fixes
VIDA v2.1.0
New Features
Improvements
Major Bug Fixes
Minor Bug Fixes
VIDA v2.0.2
Improvements
Major Bug Fixes
Minor Bug Fixes
Bibliography
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