Trusted Science. Delivered the Way You Need.
Protein & Data Preparation
Preparing protein models and large data is an important but often tedious process. We automated the process of protein, ligand, and data preparation so you have more time to pursue science.
Protein Preparation
Protein Binding Sites (SiteHopper)
Prepare and compare your protein binding site against known- and putative-binding sites for off-target interactions (SiteHopper)
Modeling Toolkits
Modeling toolkits help you create new methods or extend existing functionality for your scientific applications
Ligand and Data Preparation
Rapid and Accurate Conformer Generation (OMEGA)
Estimate pKa Value and Protonation (pKa Prospector)
Tautomer / Protomer Enumeration & Charge Assignment (QUAPAC)
Property Calculation and Filter (FILTER)
Delivered the Way You Need.
ROCS X: AI-Enabled Molecular Search Unlocks Trillions
Science Brief: Free Energy Calculations using Non-Equilibrium Switching
miniWebinar: Faster, Larger, Smarter: Filling the Funnel for Ultra-Large Scale Virtual Screening
miniWebinar | Drugging the undruggable: A highly accurate method for detecting and ranking cryptic pockets
Conversations at CUP: Geoff Skillman & Charlotte Deane
Science Brief: Free Energy Calculations using Non-Equilibrium Switching
miniWebinar: Faster, Larger, Smarter: Filling the Funnel for Ultra-Large Scale Virtual Screening
miniWebinar | Drugging the undruggable: A highly accurate method for detecting and ranking cryptic pockets
Conversations at CUP: Geoff Skillman & Charlotte Deane
Resources
Glimpse the Future through News, Events, Webinars and more
News
ROCS X: AI-Enabled Molecular Search Unlocks Trillions
BOSTON, OpenEye miniCUP—Sept. 25, 2025—Cadence Molecular Sciences (OpenEye), a business unit of Cadence (Nasdaq: CDNS), announced today at miniCUP Boston, the launch of ROCS X, an AI-enabled virtual screening solution that allows scientists to conduct 3D searches of trillions of drug-like molecules.
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Science Brief: Free Energy Calculations using Non-Equilibrium Switching
Structure-Based Lead Optimization with Non-Equilibrium Switching (NES) Chris Neale1, Gaetano Calabró1, and Christopher Bayly1 1OpenEye, Cadence Molecular Sciences, 9 Bisbee Court Suite D, Santa Fe, NM 87508 Summary: OpenEye NES predicts, within hours, ligand affinities with useful rank-order relations For DMTA cycles, selection enrichment is more important than correlation or rank ordering NES achieves 2- to 4-fold enrichments across a broad spectrum of protein targets and ligand chemistries
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Webinar
miniWebinar: Faster, Larger, Smarter: Filling the Funnel for Ultra-Large Scale Virtual Screening
Read now
Webinar
miniWebinar | Drugging the undruggable: A highly accurate method for detecting and ranking cryptic pockets
Read now
News
Conversations at CUP: Geoff Skillman & Charlotte Deane
Read now