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Applications

OpenEye’s downloadable on-premise (desktop and server) applications provide you the tools to help you design potent and selective bioactive molecules. Combining scientific innovations with the best software engineering principles, our on-premise applications are well known for both efficiency and robustness.

 

on premise apps image Sept 2023-2
Trusted Science

Applications

SHAPE AND CHEMICAL FEATURE COMPARISON
ROCS®
Shape similarity for lead discovery and lead hopping.
MOLECULAR CONFORMER GENERATION
OMEGA
Rapid, accurate conformer generation.
AUTOMATIC LIGAND FITTING
AFITT
AFITT is the only software to offer a fully automatic ligand fitting process that optimizes a real-space fit to density while keeping conformational strain to a minimum. It capitalizes on a combination of core technologies that OpenEye has developed, specifically conformer generation, shape potential, high-quality small molecule structure minimization, and visualization. The key step, after finding the appropriate conformers and aligning them to density, is the implementation of a refinement that combines force field and shape potentials, via a series of adiabatic optimizations [1, 2].
BINDING SITE COMPARISON
SiteHopper
Comparing protein binding sites is an important method in drug discovery that plays a part in a wide variety of structure-centric pursuits. One challenge for binding site comparison methods is the broad goals of such approaches: from identifying subtle differences between largely similar sites in induced fit analysis or understanding selectivity, to identifying general similarity for drug repurposing or target fishing searches.
FRAGMENT REPLACEMENT
BROOD
Explore chemical and property space around a hit or lead molecule by replacing selected fragments.
TAUTOMER/PROTOMER ENUMERATION
QUACPAC

pKa and tautomer enumeration for correct protonation states.

ELECTROSTATIC SIMILARITY FOR LEAD-HOPPING
EON

Compare electrostatic potential maps of pre-aligned molecules.

COMPOUND PROPERTY CALCULATIONS
FILTER

Remove undesirable compounds using physical property calculations and functional group knowledge.

PROTEIN PREPARATION AND MODELING
SPRUCE

Biomodeling preparation tool for protein and/or nucleic acid structures.

MOLECULAR DOCKING
OEDocking

Molecular docking tools and workflows, each tailored to tackle specific aspects of protein-ligand interactions.

WATER INTERACTION MODELING
SZMAP/GamePlan

Understand the role of water in molecular interactions such as ligand binding.

MOLECULAR ENERGETICS WITH FORCE FIELDS
SZYBKI/FreeForm

Optimize molecular structures with a force field to model 3D molecular structures.

PROTONATION INSIGHTS FOR NOVEL MOLECULES
pKa prospector

Access a comprehensive experimental pKa measurements.

VISUALIZATION OF MODELING RESULTS
VIDA

Visualize modeling results to share findings.

SHAPE AND CHEMICAL FEATURE COMPARISON
ROCS®
Shape similarity for lead discovery and lead hopping.
AUTOMATIC LIGAND FITTING
AFITT
AFITT is the only software to offer a fully automatic ligand fitting process that optimizes a real-space fit to density while keeping conformational strain to a minimum. It capitalizes on a combination of core technologies that OpenEye has developed, specifically conformer generation, shape potential, high-quality small molecule structure minimization, and visualization. The key step, after finding the appropriate conformers and aligning them to density, is the implementation of a refinement that combines force field and shape potentials, via a series of adiabatic optimizations [1, 2].
FRAGMENT REPLACEMENT
BROOD
Explore chemical and property space around a hit or lead molecule by replacing selected fragments.
ELECTROSTATIC SIMILARITY FOR LEAD-HOPPING
EON

Compare electrostatic potential maps of pre-aligned molecules.

PROTEIN PREPARATION AND MODELING
SPRUCE

Biomodeling preparation tool for protein and/or nucleic acid structures.

WATER INTERACTION MODELING
SZMAP/GamePlan

Understand the role of water in molecular interactions such as ligand binding.

PROTONATION INSIGHTS FOR NOVEL MOLECULES
pKa prospector

Access a comprehensive experimental pKa measurements.

MOLECULAR CONFORMER GENERATION
OMEGA
Rapid, accurate conformer generation.
BINDING SITE COMPARISON
SiteHopper
Comparing protein binding sites is an important method in drug discovery that plays a part in a wide variety of structure-centric pursuits. One challenge for binding site comparison methods is the broad goals of such approaches: from identifying subtle differences between largely similar sites in induced fit analysis or understanding selectivity, to identifying general similarity for drug repurposing or target fishing searches.
TAUTOMER/PROTOMER ENUMERATION
QUACPAC

pKa and tautomer enumeration for correct protonation states.

COMPOUND PROPERTY CALCULATIONS
FILTER

Remove undesirable compounds using physical property calculations and functional group knowledge.

MOLECULAR DOCKING
OEDocking

Molecular docking tools and workflows, each tailored to tackle specific aspects of protein-ligand interactions.

MOLECULAR ENERGETICS WITH FORCE FIELDS
SZYBKI/FreeForm

Optimize molecular structures with a force field to model 3D molecular structures.

VISUALIZATION OF MODELING RESULTS
VIDA

Visualize modeling results to share findings.

 

ROCS X: AI-Enabled Molecular Search Unlocks Trillions
Webinar: OpenEye's Free energy prediction for drug discovery: Ideas at breakfast, discoveries by lunch
Science Brief: Binding Free Energy Redefined: Accurate, Fast, Affordable
CUP XXV - Santa Fe March 10-12, 2026
Webinar: Novel Hits from Beyond the Known: ROCS X
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